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All papers authored by Ye Ding

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2024 Ye Ding

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Implementation and Validation of an OpenMM Plugin for the Deep Potential Representation of Potential Energy

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2023 Ye Ding

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, Jing Huang

DP/MM: A Hybrid Model for Zinc-Protein Interactions in Molecular Dynamics

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Jinzhe Zeng

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, Zeyu Li

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, Marián Rynik

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, Li’ang Huang

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, Ziyao Li

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, Yingze Wang, Haotian Ye

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, Ping Tuo

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, Jiabin Yang, Ye Ding

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and 32 other authors

DeePMD-kit v2: A software package for deep potential models

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Zilin Song

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, Ye Ding

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Constant advance replicas method for locating minimum energy paths and transition states

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Ye Ding

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, Kuang Yu, Jing Huang

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Data science techniques in biomolecular force field development

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2021 Qiaozhu Tan, Ye Ding

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, Zongyang Qiu, Jing Huang

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Binding Energy and Free Energy of Calcium Ion to Calmodulin EF-Hands with the Drude Polarizable Force Field

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2020 Ye Ding

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, You Xu, Cheng Qian, Jinfeng Chen, Jian Zhu, Houhou Huang, Yi Shi, Jing Huang

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Predicting partition coefficients of drug-like molecules in the SAMPL6 challenge with Drude polarizable force fields

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