Nhung Pham - Dissemin

All papers authored by Nhung Pham

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2024 Anna Niarakis, Marek Ostaszewski, Alexander Mazein, Inna Kuperstein, Martina Kutmon, Marc E. Gillespie, Akira Funahashi, Marcio Luis Acencio, Ahmed Hemedan, Michael Aichem, Karsten Klein, Tobias Czauderna, Felicia Burtscher, Takahiro G. Yamada, Yusuke Hiki and 36 other authors

Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

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2023 Maroussia M. P. Ganpat, Francisco Morales-Rodriguez, Nhung Pham

, Philip Lijnzaad, Terezinha de Souza, Sepide Derakshan, Arianna Fumagalli, Peter Zeller, Aleksandra Balwierz, Dilara Ayyildiz, Marry M. van den Heuvel Eibrink, Ronald R. de Krijger, Alexander van Oudenaarden, Thanasis Margaritis, Susana Chuva de Sousa Lopes and 1 other authors

An engineered tumor organoid model reveals cellular identity and signaling trajectories underlying translocation RCC

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2022 Nhung Pham

, Nuray Talih, Friederike Ehrhart, Chris T. Evelo, Martina Kutmon

Different B cell activation patterns in asymptomatic and symptomatic COVID-19 patients

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Anna Niarakis, Marek Ostaszewski, Alexander Mazein, Inna Kuperstein, Martina Kutmon, Marc E. Gillespie, Akira Funahashi, Marcio Luis Acencio, Ahmed Abdelmonem Hemedan, Michael Aichem, Karsten Klein, Tobias Czauderna, Felicia Burtscher, Takahiro G. Yamada, Yusuke Hiki and 36 other authors

A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms

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This paper is made freely available by the publisher.

Nhung Pham

, Finterly Hu, Chris T. Evelo, Martina Kutmon

Tissue-specific pathway activities: A retrospective analysis in COVID-19 patients

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2021 Marek Ostaszewski, Miguel Ponce de Leon, Takahiro G. Yamada, Vidisha Singh, Egon L. Wilighagen, Andreas Ruepp, Jakob Vanhoefer, Muying Wang, Jeremy Zucker, Julia Somers, Jeremy Teuton, Gökçe Yağmur Summak, Julia Scheel, Falk Schreiber, Miguel Ponce de Leon and 130 other authors

COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.

Download from onlinelibrary.wiley.com

Kristina Hanspers

, Martina Kutmon

, Susan L. Coort

, Daniela Digles

, Lauren J. Dupuis

, Friederike Ehrhart

, Finterly Hu

, Elisson N. Lopes

, Marvin Martens

, Nhung Pham

, Woosub Shin

, Denise N. Slenter

, Andra Waagmeester

, Egon L. Willighagen

, Laurent A. Winckers

and 2 other authors

Ten simple rules for creating reusable pathway models for computational analysis and visualization

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Nhung Pham

, Maarten Reijnders, Maria Suarez-Diez

, Bart Nijsse, Jan Springer, Gerrit Eggink, Peter J. Schaap

Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production

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2020 Nhung Tt Pham

, Maarten Reijnders, Maria Suarez-Diez, Bart Nijsse, Jan Springer, Gerrit Eggink, Peter Schaap

Genome-scale metabolic modelling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production

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2019 Nhung Pham

, Ruben G. A. van Heck

, Ruben Van Heck, Jesse C. J. van Dam

, Peter J. Schaap

, Edoardo Saccenti

, Maria Suarez-Diez

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling

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2016 Nhung Pham

Genome-scale constraint-based metabolic modeling and analysis of Nannochloropsis Sp.

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All papers authored by Nhung Pham