All papers authored by Alexandra J. Lee
Refreshing results…
2023
Halie M. Rando,
Ronan Lordan,
Likhitha Kolla,
Elizabeth Sell,
Alexandra J. Lee 
,
Nils Wellhausen,
Amruta Naik,
Jeremy P. Kamil,
Anthony Gitter,
Casey S. Greene,
John P. Barton,
Simina M. Boca,
Joel D. Boerckel,
Christian Brueffer,
James Brian Byrd
and 37 other authors
,
Nils Wellhausen,
Amruta Naik,
Jeremy P. Kamil,
Anthony Gitter,
Casey S. Greene,
John P. Barton,
Simina M. Boca,
Joel D. Boerckel,
Christian Brueffer,
James Brian Byrd
and 37 other authors
The Coming of Age of Nucleic Acid Vaccines during COVID-19
Download from journals.asm.org
Halie M. Rando,
Ronan Lordan,
Alexandra J. Lee ,
Amruta Naik,
Nils Wellhausen,
Elizabeth Sell,
Likhitha Kolla,
Anthony Gitter,
Casey S. Greene,
Vikas Bansal,
John P. Barton,
Simina M. Boca,
Joel D. Boerckel,
Christian Brueffer,
James Brian Byrd
and 38 other authors
,
Amruta Naik,
Nils Wellhausen,
Elizabeth Sell,
Likhitha Kolla,
Anthony Gitter,
Casey S. Greene,
Vikas Bansal,
John P. Barton,
Simina M. Boca,
Joel D. Boerckel,
Christian Brueffer,
James Brian Byrd
and 38 other authors
Application of Traditional Vaccine Development Strategies to SARS-CoV-2
Download from journals.asm.org
Georgia Doing ,
Alexandra J. Lee ,
Samuel L. Neff,
Taylor Reiter,
Jacob D. Holt,
Bruce A. Stanton,
Casey S. Greene ,
Deborah A. Hogan
,
Alexandra J. Lee ,
Samuel L. Neff,
Taylor Reiter,
Jacob D. Holt,
Bruce A. Stanton,
Casey S. Greene ,
Deborah A. Hogan
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia
Download from journals.asm.org
2022
Alexandra J. Lee ,
Dallas L. Mould ,
Jake Crawford ,
Dongbo Hu ,
Rani K. Powers ,
Georgia Doing ,
James C. Costello ,
Deborah A. Hogan ,
Casey S. Greene
,
Dallas L. Mould ,
Jake Crawford ,
Dongbo Hu ,
Rani K. Powers ,
Georgia Doing ,
James C. Costello ,
Deborah A. Hogan ,
Casey S. Greene
SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses
Download from doi.org
Samuel L. Neff,
Thomas H. Hampton ,
Charles Puerner,
Liviu Cengher ,
Georgia Doing,
Alexandra J. Lee ,
Katja Koeppen,
Ambrose L. Cheung ,
Deborah A. Hogan,
Robert A. Cramer,
Bruce A. Stanton
Download from www.nature.com
,
Charles Puerner,
Liviu Cengher ,
Georgia Doing,
Alexandra J. Lee ,
Katja Koeppen,
Ambrose L. Cheung ,
Deborah A. Hogan,
Robert A. Cramer,
Bruce A. Stanton
Download from www.nature.com
Benjamin D. Lee ,
Anthony Gitter ,
Casey S. Greene ,
Sebastian Raschka ,
Finlay Maguire ,
Alexander J. Titus ,
Michael D. Kessler ,
Alexandra J. Lee ,
Marc G. Chevrette ,
Paul Allen Stewart ,
Thiago Britto-Borges ,
Evan M. Cofer ,
Kun-Hsing Yu ,
Juan Jose Carmona ,
Elana J. Fertig
and 5 other authors
,
Anthony Gitter ,
Casey S. Greene ,
Sebastian Raschka ,
Finlay Maguire ,
Alexander J. Titus ,
Michael D. Kessler ,
Alexandra J. Lee ,
Marc G. Chevrette ,
Paul Allen Stewart ,
Thiago Britto-Borges ,
Evan M. Cofer ,
Kun-Hsing Yu ,
Juan Jose Carmona ,
Elana J. Fertig
and 5 other authors
Ten quick tips for deep learning in biology
Download from doi.org
Halie M. Rando,
Adam L. MacLean,
Alexandra J. Lee ,
Ronan Lordan,
Sandipan Ray,
Vikas Bansal,
Ashwin N. Skelly ,
Elizabeth Sell,
John J. Dziak,
Lamonica Shinholster,
Lucy D’Agostino McGowan,
Lucy D’Agostino McGowan,
Marouen Ben Guebila,
Marouen Ben Guebila,
Nils Wellhausen
and 20 other authors
Download from journals.asm.org
,
Ronan Lordan,
Sandipan Ray,
Vikas Bansal,
Ashwin N. Skelly ,
Elizabeth Sell,
John J. Dziak,
Lamonica Shinholster,
Lucy D’Agostino McGowan,
Lucy D’Agostino McGowan,
Marouen Ben Guebila,
Marouen Ben Guebila,
Nils Wellhausen
and 20 other authors
Download from journals.asm.org
Arkarachai Fungtammasan ,
Alexandra Lee ,
Jaclyn Taroni ,
Kurt Wheeler ,
Chen-Shan Chin ,
Sean Davis ,
Casey Greene
,
Alexandra Lee ,
Jaclyn Taroni ,
Kurt Wheeler ,
Chen-Shan Chin ,
Sean Davis ,
Casey Greene
Ten simple rules for large-scale data processing
Download from doi.org
Alexandra J. Lee ,
Taylor Reiter,
Georgia Doing,
Julia Oh,
Deborah A. Hogan,
Casey S. Greene
,
Taylor Reiter,
Georgia Doing,
Julia Oh,
Deborah A. Hogan,
Casey S. Greene
Using genome-wide expression compendia to study microorganisms
Download from doi.org
2021
Halie M. Rando,
Nils Wellhausen,
Soumita Ghosh,
Alexandra J. Lee ,
Anna Ada Dattoli,
Fengling Hu,
James Brian Byrd,
Diane N. Rafizadeh,
Ronan Lordan,
Yanjun Qi,
Yuchen Sun,
Christian Brueffer,
Jeffrey M. Field,
Marouen Ben Guebila,
Marouen Ben Guebila
and 10 other authors
,
Anna Ada Dattoli,
Fengling Hu,
James Brian Byrd,
Diane N. Rafizadeh,
Ronan Lordan,
Yanjun Qi,
Yuchen Sun,
Christian Brueffer,
Jeffrey M. Field,
Marouen Ben Guebila,
Marouen Ben Guebila
and 10 other authors
Identification and Development of Therapeutics for COVID-19
Download from journals.asm.org
Halie M. Rando,
Adam L. MacLean,
Alexandra J. Lee ,
Ronan Lordan,
Sandipan Ray,
Vikas Bansal,
Ashwin N. Skelly ,
Elizabeth Sell,
John J. Dziak,
Lamonica Shinholster,
Lucy D'Agostino McGowan,
Lucy D’Agostino McGowan,
Marouen Ben Guebila,
Marouen Ben Guebila,
Nils Wellhausen
and 21 other authors
Download from journals.asm.org
,
Ronan Lordan,
Sandipan Ray,
Vikas Bansal,
Ashwin N. Skelly ,
Elizabeth Sell,
John J. Dziak,
Lamonica Shinholster,
Lucy D'Agostino McGowan,
Lucy D’Agostino McGowan,
Marouen Ben Guebila,
Marouen Ben Guebila,
Nils Wellhausen
and 21 other authors
Download from journals.asm.org
2020
Alexandra J. Lee ,
YoSon Park ,
Georgia Doing ,
Deborah A. Hogan ,
Casey S. Greene
,
YoSon Park ,
Georgia Doing ,
Deborah A. Hogan ,
Casey S. Greene
Correcting for experiment-specific variability in expression compendia can remove underlying signals
Download from doi.org
Michelle E. Clay ,
John H. Hammond,
Fangfang Zhong,
Xiaolei Chen,
Caitlin H. Kowalski,
Alexandra J. Lee ,
Monique S. Porter,
Thomas H. Hampton,
Casey S. Greene ,
Ekaterina V. Pletneva ,
Deborah A. Hogan
Download from doi.org
,
John H. Hammond,
Fangfang Zhong,
Xiaolei Chen,
Caitlin H. Kowalski,
Alexandra J. Lee ,
Monique S. Porter,
Thomas H. Hampton,
Casey S. Greene ,
Ekaterina V. Pletneva ,
Deborah A. Hogan
Download from doi.org
2019
Naihui Zhou,
Timothy R. Bergquist,
Yuxiang Jiang,
Alexandra J. Lee ,
Balint Z. Kacsoh,
Alex W. Crocker,
Kimberley A. Lewis ,
Huy N. Nguyen,
Ahmet S. Rifaioglu,
Md Nafiz Hamid,
Alperen Dalkıran,
Rengul Cetin Atalay,
Chengxin Zhang,
Rebecca L. Hurto,
Peter L. Freddolino
and 162 other authors
Download from link.springer.com
,
Balint Z. Kacsoh,
Alex W. Crocker,
Kimberley A. Lewis ,
Huy N. Nguyen,
Ahmet S. Rifaioglu,
Md Nafiz Hamid,
Alperen Dalkıran,
Rengul Cetin Atalay,
Chengxin Zhang,
Rebecca L. Hurto,
Peter L. Freddolino
and 162 other authors
Download from link.springer.com
2018
Alexandra J. Lee ,
Ivan Chang,
Julie G. Burel,
Cecilia S. Lindestam Arlehamn,
Aishwarya Mandava,
Daniela Weiskopf,
Bjoern Peters,
Alessandro Sette,
Richard H. Scheuermann,
Yu Qian
Download from api.wiley.com
,
Ivan Chang,
Julie G. Burel,
Cecilia S. Lindestam Arlehamn,
Aishwarya Mandava,
Daniela Weiskopf,
Bjoern Peters,
Alessandro Sette,
Richard H. Scheuermann,
Yu Qian
Download from api.wiley.com
2017
Trygve Bakken,
Lindsay Cowell,
Brian D. Aevermann,
Mark Novotny,
Rebecca Hodge,
Jeremy A. Miller,
Alexandra Lee ,
Ivan Chang,
Jamison McCorrison,
Bali Pulendran,
Yu Qian,
Nicholas J. Schork,
Roger S. Lasken,
Ed S. Lein,
Richard H. Scheuermann
,
Ivan Chang,
Jamison McCorrison,
Bali Pulendran,
Yu Qian,
Nicholas J. Schork,
Roger S. Lasken,
Ed S. Lein,
Richard H. Scheuermann
Cell type discovery and representation in the era of high-content single cell phenotyping
Download from link.springer.comMissing publications? Search for publications with a matching author name.