Stéphane Hué - Dissemin

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All papers authored by Stéphane Hué

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2023 Francisco Gerardo M. Polotan

ORCID

, Carl Raymund P. Salazar

ORCID

, Hannah Leah E. Morito

ORCID

, Miguel Francisco B. Abulencia, Roslind Anne R. Pantoni, Edelwisa S. Mercado, Stéphane Hué

ORCID

, Rossana A. Ditangco

Reconstructing the phylodynamic history and geographic spread of the CRF01_AE-predominant HIV-1 epidemic in the Philippines from PR/RT sequences sampled from 2008 to 2018

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Alexis Robert, Joseph Tsui Lok Hei, Conall H. Watson, Pierre-Stéphane Gsell, Yper Hall, Andrew Rambaut

ORCID

, Ira M. Longini, Keïta Sakoba, Adam J. Kucharski, Alhassane Touré, Sévérine Danmadji Nadlaou, Mamadou Saidou Barry, Thierno Oumar Fofana, Ibrahima Lansana Kaba, Lansana Sylla and 10 other authors

Quantifying the value of viral genomics when inferring who infected whom in the 2014–16 Ebola virus outbreak in Guinea

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Maria-Luisa Carrozza, Anna-Maria Niewiadomska, Maurizio Mazzei

ORCID

, Mounir R. Abi-Said, Stéphane Hué

ORCID

, Joseph Hughes

ORCID

ORCID

, Robert J. Gifford

ORCID

Emergence and pandemic spread of small ruminant lentiviruses

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2022 Christian Julian Villabona-Arenas

ORCID

, Stéphane Hué

ORCID

, James A. C. Baxter, Matthew Hall, Katrina A. Lythgoe

ORCID

ORCID

, Katherine E. Atkins

ORCID

Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs

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2021 Samuel Clifford, Pauline Waight, Jada Hackman, Stephane Hué

ORCID

, Gower Cm, Charlotte M. Gower, Kirsebom Fc, Freja Cm M. Kirsebom, Catriona Skarnes, Louise Letley, Jamie Lopez Bernal

ORCID

, Jamie Lopez Bernal, Bernal Jl, Nick Andrews, Stefan Flasche and 1 other authors

Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission: a prospective cohort study in England

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Luc Blassel, Alison L. Hill, Anna Tostevin, Christian Julian Villabona-Arenas, Martine Peeters, Stéphane Hué

ORCID

, Olivier Gascuel

Using machine learning and big data to explore the drug resistance landscape in HIV

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James Baxter, Ch Julián Villabona-Arenas, Sarah Langhorne, Ting Shi

ORCID

, Damien C. Tully, C. H. Julián Villabona Arenas, Stéphane Hué

ORCID

, Jan Albert, Andrew Leigh Brown, Andrew Leigh Brown, Katherine E. Atkins

Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis

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2020 C.-H. Julián Villabona-Arenas

ORCID

ORCID

, Katrina A. Lythgoe, Stephen G. Gaffney

ORCID

, Roland R. Regoes

ORCID

, Stéphane Hué

ORCID

, Katherine E. Atkins

ORCID

Number of HIV-1 founder variants is determined by the recency of the source partner infection

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2019 C. H. Julián Villabona Arenas, Matthew Hall, Katrina A. Lythgoe, Stephen G. Gaffney, Roland R. Regoes, Stéphane Hué

ORCID

, Katherine E. Atkins

HIV-1 founder variant multiplicity is determined by the infection stage of the source partner

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Ann M. Dennis

ORCID

, Stéphane Hué

ORCID

, Rachael Billock, Sara Levintow, Joseph Sebastian, William C. Miller, Joseph J. Eron

Human Immunodeficiency Virus Type 1 Phylodynamics to Detect and Characterize Active Transmission Clusters in North Carolina

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2016 Laith Yakob, Adam Kucharski, Stephane Hue

ORCID

, W. John Edmunds

Low risk of a sexually-transmitted Zika virus outbreak

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R. Bridget Ferns, Alexander W. Tarr

ORCID

, Stephane Hue

ORCID

, Richard A. Urbanowicz

ORCID

, Cp Patrick McClure, C. Patrick McClure, Richard Gilson

ORCID

, Jonathan K. Ball, Eleni Nastouli, Jeremy A. Garson

ORCID

, Deenan Pillay

Hepatitis C virus quasispecies and pseudotype analysis from acute infection to chronicity in HIV-1 co-infected individuals

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2015 Manon Ragonnet-Cronin, Samantha J. Lycett

ORCID

, Emma B. Hodcroft

ORCID

, Stéphane Hué

ORCID

, Esther Fearnhill, Alison E. Brown, Valerie Delpech, David Dunn, United Kingdom Hiv Drug Resistance Database, Andrew J. Leigh Brown

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

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Ann M. Dennis, Stéphane Hué

ORCID

, Dana Pasquale, Sonia Napravnik, Joseph Sebastian, William C. Miller, Joseph J. Eron

HIV Transmission Patterns Among Immigrant Latinos Illuminated by the Integration of Phylogenetic and Migration Data

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Christopher Monit, Richard A. Goldstein, Greg Towers

ORCID

, Stéphane Hué

ORCID

Positive Selection Analysis of Overlapping Reading Frames Is Invalid

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Raphaël Mourad, Amp Uk Hiv Drug Resistance Database &, Anti-Hiv Drug Resistance Network the Collaborative Hiv, François Chevennet, David T. Dunn, Esther Fearnhill, Valerie Delpech, David Asboe, Olivier Gascuel, Stéphane Hue

ORCID

A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK:

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Camille Marie Lange, Stéphane Hué

ORCID

, Avy Violari, Mark Cotton, Diana Gibb, Abdel Babiker, Kennedy Otwombe, Ravindre Panchia, Els Dobbels, Patrick Jean-Philippe, James A. McIntyre, Deenan Pillay, Ravindra Kumar Gupta

Single Genome Analysis for the Detection of Linked Multiclass Drug Resistance Mutations in HIV-1-Infected Children After Failure of Protease Inhibitor-Based First-Line Therapy:

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Gregory Berger, Madeleine Lawrence, Stephane Hué

ORCID

, Stuart J. D. Neil

ORCID

G ₂ /M Cell Cycle Arrest Correlates with Primate Lentiviral Vpr Interaction with the SLX4 Complex

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2014 Katherine A. Sutherland, Jean L. Mbisa, Jade Ghosn, Marie-Laure Chaix, Isabelle Cohen-Codar, Stephane Hue

ORCID

, Jean-Francois Delfraissy, Constance Delaugerre, Ravindra K. Gupta

Phenotypic characterization of virological failure following lopinavir/ritonavir monotherapy using full-length gag–protease genes

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Collaboration on Hiv Drug Resistance and the Collaborative Hi Uk, D. Webster, P. Rice, C. Sabin, E. Smit, K. Templeton, P. Tilston, W. Tong, S. Thomas, I. Williams, H. Zhang, M. Zuckerman, A. Wildfire, R. Tandy, J. Shepherd and 53 other authors

Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions:

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