John Parkinson - Dissemin

Papers authored by John Parkinson

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2009 Avinash Persaud, Philipp Alberts, Eva M. Amsen, Xuejian Xiong, James Wasmuth, Zachary Saadon, Chris Fladd, John Parkinson

, Daniela Rotin

Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays

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José M. Peregrín-Alvarez, Chris Sanford, John Parkinson

The conservation and evolutionary modularity of metabolism

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2008 Isabel Aznarez, Yoseph Barash, Ofer Shai, David He, Julian Zielenski, Lap-Chee Tsui, John Parkinson

, Brendan J. Frey, Johanna M. Rommens, Benjamin J. Blencowe

A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation

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David He, John Parkinson

SubSeqer: A graph-based approach for the detection and identification of repetitive elements in low-complexity sequences

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2007 C. Su, J. M. Peregrin-Alvarez, G. Butland, S. Phanse, V. Fong, A. Emili, J. Parkinson

Bacteriome.org an integrated protein interaction database for E. coli

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This paper was not found in any repository, but could be made available legally by the author.

David He, Martin Chung, Esther Chan

, Trevis Alleyne, Kevin C. H. Ha, Ming Miao, Richard J. Stahl, Fred W. Keeley, John Parkinson

Comparative genomics of elastin: Sequence analysis of a highly repetitive protein

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José Manuel Peregrín-Álvarez, John Parkinson

The global landscape of sequence diversity

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Ronish Gupta, Bart Kus, Christopher Fladd, James Wasmuth, Raffi Tonikian, Sachdev Sidhu, Nevan J. Krogan, John Parkinson

, Daniela Rotin

Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast

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2006 Chris Sanford, Matthew L. K. Yip, Carl White, John Parkinson

Cell++ - Simulating biochemical pathways

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Martin I. S. Chung, Ming Miao, Richard J. Stahl, Esther Chan

, John Parkinson

, Fred W. Keeley

Sequences and domain structures of mammalian, avian, amphibian and teleost tropoelastins: Clues to the evolutionary history of elastins

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Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, José M. Peregrín-Alvarez, Michael Shales, Xin Zhang, Michael Davey and 38 other authors

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

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2005 James Wasmuth, Ralf Schmid, Alasdair Anthony, John Parkinson

, Mark Blaxter

Exploring Parasite Gene Space

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Dinesh C. Soares, Dietlind L. Gerloff, Neil R. Syme, Andrew F. W. Coulson, John Parkinson

, Paul N. Barlow

Large-scale modelling as a route to multiple surface comparisons of the CCP module family

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Gareth Butland, José Manuel Peregrín-Alvarez, Joyce Li, Wehong Yang, Xiaochun Yang, Veronica Canadien, Andrei Starostine, Dawn Richards, Bryan Beattie, Nevan Krogan, Michael Davey, John Parkinson

, Jack Greenblatt, Andrew Emili

Interaction network containing conserved and essential protein complexes in Escherichia coli

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Richard Gordon, John Parkinson

Potential Roles for Diatomists in Nanotechnology

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2004 John Parkinson

, Makedonka Mitreva, Claire Whitton, Marian Thomson, Jennifer Daub, John Martin, Ralf Schmid, Neil Hall, Bart Barrell, Robert H. Waterston, James P. McCarter, Mark L. Blaxter

A transcriptomic analysis of the phylum nematoda.

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John Parkinson

, Alasdair Anthony, James Wasmuth, Ralf Schmid, Ann Hedley, Mark Blaxter

PartiGene - Constructing partial genomes

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John Parkinson

, Mark Blaxter

Expressed sequence tags: analysis and annotation.

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Y. M. Harcus, J. Parkinson

, C. Fernández, J. Daub, M. E. Selkirk, M. L. Blaxter, R. M. Maizels

Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensis and the evolution of secreted proteins in parasites.

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2003 John Parkinson

, Makedonka Mitreva, Neil Hall, Mark Blaxter, James P. McCarter

400 000 nematode ESTs on the Net

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Papers authored by John Parkinson