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All papers authored by Dan Zhao

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2024 Tingzhong Tian

ORCID

, Shuya Li, Ziting Zhang, Lin Chen, Jianyang Zeng

ORCID

, Ziheng Zou, Dan Zhao

ORCID

Benchmarking compound activity prediction for real-world drug discovery applications

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Peizhuo Wang

ORCID

, Xiao Wen

ORCID

, Han Li

ORCID

, Peng Lang, Shuya Li, Yipin Lei, Hantao Shu

ORCID

, Lin Gao

ORCID

, Dan Zhao

ORCID

, Jianyang Zeng

ORCID

Author Correction: Deciphering driver regulators of cell fate decisions from single-cell transcriptomics data with CEFCON

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2023 Peizhuo Wang

ORCID

, Xiao Wen

ORCID

, Han Li

ORCID

, Peng Lang, Shuya Li, Yipin Lei, Hantao Shu

ORCID

, Lin Gao

ORCID

, Dan Zhao

ORCID

, Jianyang Zeng

ORCID

Deciphering driver regulators of cell fate decisions from single-cell transcriptomics data with CEFCON

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Han Li

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, Ruotian Zhang, Yaosen Min, Dacheng Ma, Dan Zhao

ORCID

, Jianyang Zeng

ORCID

A knowledge-guided pre-training framework for improving molecular representation learning

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Shuya Li, Tingzhong Tian

ORCID

, Ziting Zhang, Ziheng Zou, Dan Zhao

ORCID

, Jianyang Zeng

PocketAnchor: Learning structure-based pocket representations for protein-ligand interaction prediction

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Xingang Peng

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, Yipin Lei, Peiyuan Feng, Lemei Jia, Jianzhu Ma, Dan Zhao

ORCID

, Jianyang Zeng

ORCID

Characterizing the interaction conformation between T-cell receptors and epitopes with deep learning

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Jianyang Zeng, Chang Liu, Kaimin Xiao, Cuinan Yu, Yipin Lei, Kangbo Lyu, Tingzhong Tian, Dan Zhao

ORCID

, Fengfeng Zhou, Haidong Tang

A probabilistic knowledge graph for target identification

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2021 Yipin Lei, Shuya Li, Ziyi Liu, Fangping Wan, Tingzhong Tian

ORCID

, Shao Li, Dan Zhao

ORCID

, Jianyang Zeng

ORCID

A deep-learning framework for multi-level peptide–protein interaction prediction

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Hantao Shu

ORCID

, Jingtian Zhou, Qiuyu Lian, Han Li

ORCID

, Dan Zhao

ORCID

, Jianyang Zeng

ORCID

ORCID

Modeling gene regulatory networks using neural network architectures

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Yiyue Ge

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, Tingzhong Tian

ORCID

, Suling Huang, Fangping Wan, Jingxin Li, Shuya Li, Xiaoting Wang, Hui Yang, Lixiang Hong, Nian Wu, Enming Yuan, Yunan Luo, Lili Cheng, Chengliang Hu, Yipin Lei and 18 other authors

An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19

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Tingzhong Tian

ORCID

, Shuya Li, Peng Lang, Dan Zhao

ORCID

, Jianyang Zeng

Full-length ribosome density prediction by a multi-input and multi-output model

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2020 Lixiang Hong

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, Jinjian Lin, Shuya Li, Fangping Wan, Hui Yang, Tao Jiang, Dan Zhao

ORCID

, Jianyang Zeng

ORCID

A novel machine learning framework for automated biomedical relation extraction from large-scale literature repositories

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Shuya Li, Fangping Wan

ORCID

, Hantao Shu, Tao Jiang

ORCID

, Dan Zhao

ORCID

, Jianyang Zeng

ORCID

MONN: A Multi-objective Neural Network for Predicting Pairwise Non-covalent Interactions and Binding Affinities Between Compounds and Proteins

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2017 Zhuang Li

ORCID

, Dan Zhao

ORCID

ORCID

ORCID

Structural and biochemical characterization of DAXX-ATRX interaction

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