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All papers authored by Jianxu Chen

This paper was not found in any repository; the policy of its publisher is unknown or unclear.

2024 Yu Zhou, Shuo Zhao, Justin Sonneck, Jianxu Chen

ORCID

2D Label-free Prediction of Multiple Organelles Across Different Transmitted-light Microscopy Images with Bag-of-Experts

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Maarten van Smeden, Bram van Ginneken, Annika Reinke

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, Gaël Varoquaux

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, Manuel Wiesenfarth, Ziv R. Yaniv

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, Minu Dietlinde Tizabi

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, Michael Baumgartner

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, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Ali Emre Kavur

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ORCID

, Carole H. Sudre, Laura Acion

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and 70 other authors

Understanding metric-related pitfalls in image analysis validation

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Yu Zhou, Jiajun Cao, Justin Sonneck, Sweta Banerjee

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, Stefanie Dörr, Anika Grüneboom

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, Kristina Lorenz, Shanghang Zhang

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, Jianxu Chen

ORCID

EfficientBioAI: making bioimaging AI models efficient in energy and latency

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Justin Sonneck

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, Yu Zhou

ORCID

, Jianxu Chen

ORCID

MMV_Im2Im: an open-source microscopy machine vision toolbox for image-to-image transformation

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This paper is made freely available by the publisher.

2023 Zülal Cibir, Jacqueline Hassel, Justin Sonneck, Lennart Kowitz, Alexander Beer, Andreas Kraus, Gabriel Hallekamp, Martin Rosenkranz, Pascal Raffelberg, Sven Olfen, Kamil Smilowski, Roman Burkard

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, Iris Helfrich

ORCID

, Ali Ata Tuz, Vikramjeet Singh and 10 other authors

ComplexEye: a multi-lens array microscope for high-throughput embedded immune cell migration analysis

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Jianxu Chen

ORCID

, Matheus P. Viana, Susanne M. Rafelski

ORCID

When seeing is not believing: application-appropriate validation matters for quantitative bioimage analysis

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Zhenge Jia

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, Jianxu Chen

ORCID

ORCID

, John Kheir, Jingtong Hu, Han Xiao, Sui Peng, Xiaobo Sharon Hu, Danny Chen, Yiyu Shi

ORCID

The importance of resource awareness in artificial intelligence for healthcare

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Philippa Spangenberg, Ayan Mohamud Yusuf, Nina Hagemann, Anthony Squire, Nils Förster, Sascha D. Krauß, Yachao Qi, Ayan Mohamud Yusuf, Jing Wang, Anika Grüneboom, Lennart Kowitz, Sebastian Korste, Matthias Totzeck, Zülal Cibir, Ali Ata Tuz and 12 other authors

Rapid and fully automated blood vasculature analysis in 3D light-sheet image volumes of different organs

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Matheus P. Viana, Jianxu Chen

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, Theo A. Knijnenburg, Ritvik Vasan, Calysta Yan, Joy E. Arakaki, Matte Bailey, Ben Berry, Antoine Borensztejn, Eva M. Brown

ORCID

, Sara Carlson, Julie A. Cass, Basudev Chaudhuri, Kimberly R. Cordes Metzler, Mackenzie E. Coston and 69 other authors

Integrated intracellular organization and its variations in human iPS cells

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This paper is made freely available by the publisher.

2022 Peixian Liang

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, Yizhe Zhang, Yifan Ding, Jianxu Chen

ORCID

, Chinedu S. Madukoma

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ORCID

, Joshua D. Shrout, Danny Z. Chen

ORCID

H-EMD: A Hierarchical Earth Mover’s Distance Method for Instance Segmentation

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2021 Kaytlyn A. Gerbin, Tanya Grancharova, Rory M. Donovan-Maiye, Melissa C. Hendershott, Helen G. Anderson, Jackson M. Brown, Jianxu Chen

ORCID

, Stephanie Q. Dinh, Jamie L. Gehring, Gregory R. Johnson, HyeonWoo Lee, Aditya Nath, Angelique M. Nelson, M. Filip Sluzewski, Matheus P. Viana and 8 other authors

Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes

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2020 Hongxiao Wang, Hao Zheng, Jianxu Chen

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, Lin Yang, Yizhe Zhang, Danny Z. Chen

Unlabeled Data Guided Semi-supervised Histopathology Image Segmentation

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Jianxu Chen

ORCID

Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable

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Peixian Liang, Jianxu Chen

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, Yizhe Zhang, Hongxiao Wang, Hao Zheng, Pengfei Gu, Danny Chen

InTracker: An Integrated Detector-Tracker Framework for Cell Detection and Tracking

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

2019 Hao Zheng, Lin Yang, Jianxu Chen

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, Jun Han, Yizhe Zhang, Peixian Liang, Zhuo Zhao, Chaoli Wang, Danny Z. Chen

Biomedical Image Segmentation via Representative Annotation

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Chinedu S. Madukoma

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, Peixian Liang, Aleksandar Dimkovikj, Jianxu Chen

ORCID

, Shaun W. Lee, Danny Z. Chen, Joshua D. Shrout

ORCID

Single Cells Exhibit Differing Behavioral Phases during Early Stages of Pseudomonas aeruginosa Swarming

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Peixian Liang, Jianxu Chen

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, Hao Zheng, Lin Yang, Yizhe Zhang, Danny Z. Chen

Cascade Decoder: A Universal Decoding Method For Biomedical Image Segmentation

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Pavel A. Brodskiy, Qinfeng Wu, Dharsan K. Soundarrajan, Francisco J. Huizar, Jianxu Chen

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, Peixian Liang, Cody Narciso, Megan K. Levis, Ninfamaria Arredondo-Walsh, Danny Z. Chen, Jeremiah J. Zartman

Decoding Calcium Signaling Dynamics during Drosophila Wing Disc Development

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

2018 Jianxu Chen

ORCID

The Allen Cell and Structure Segmenter: a new open source toolkit for segmenting 3D intracellular structures in fluorescence microscopy images

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