All papers authored by Mark T. Holder
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A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species
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Cody E. Hinchliff ,
James F. Allman ,
Joseph W. Brown ,
Karen A. Cranston ,
Mark T. Holder ,
Jonathan A. Rees ,
Stephen A. Smith
Phylesystem: a git-based data store for community-curated phylogenetic estimates
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Kimmen Sjoelander,
David A. Liberles,
Ivet Bahar,
Ugo Bastolla,
Jesse Bloom,
Erich Bornberg-Bauer,
Lucy J. Colwell,
Apj P. Jason de Koning,
Nikolay V. Dokholyan,
Julian Echave ,
Arne Elofsson ,
Dietlind L. Gerloff,
A. P. Jason de Koning,
Richard A. Goldstein
and 21 other authors
The interface of protein structure, protein biophysics, and molecular evolution
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James P. Balhoff ,
Jason A. Caravas,
Mark T. Holder ,
Hilmar Lapp,
Wayne P. Maddison,
Peter E. Midford,
Anurag Priyam,
Jeet Sukumaran,
Xuhua Xia,
Arlin Stoltzfus
NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata
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An Algorithm for Calculating the Probability of Classes of Data Patterns on a Genealogy
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Serita M. Nelesen,
Jiaye Yu,
Alexandros P. Stamatakis,
C. Randal Linder,
C. Randal Linder
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John P. Huelsenbeck
A Dirichlet Process Prior for Estimating Lineage-Specific Substitution Rates
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Paul O. Lewis,
John P. Huelsenbeck,
Fredrik Ronquist,
David L. Swofford,
Michael P. Cummings,
Andrew Rambaut,
Marc A. Suchard
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William Orsi,
John Bunge,
Sunok Jeon,
Richard Christen,
Chesley Leslin,
Mark Holder ,
Gordon T. Taylor,
Paula Suarez,
Ramon Varela,
Slava Epstein
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Sandra Knapp,
Robert Guralnick,
Jorge Soberón,
Mark T. Holder
The big questions for biodiversity informatics
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Paul O. Lewis,
David L. Swofford
The Akaike Information Criterion Will Not Choose the No Common Mechanism Model
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DendroPy: A Python Library for Phylogenetic Computing
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John A. Rhodes
Estimating Trees from Filtered Data: Identifiability of Models for Morphological Phylogenetics
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Derrick J. Zwickl,
Christophe Dessimoz
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Jeet Sukumaran,
Paul O. Lewis
A Justification for Reporting the Majority-Rule Consensus Tree in Bayesian Phylogenetics
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