Carlo Colantuoni - Dissemin

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All papers authored by Carlo Colantuoni

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Seth A. Ament

ORCID

, Marcia Cortes-Gutierrez, Brian R. Herb

ORCID

, Evelina Mocci, Carlo Colantuoni

ORCID

, Margaret M. McCarthy

ORCID

A single-cell genomic atlas for maturation of the human cerebellum during early childhood

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2022 Huan Chen, Jinrui Liu, Shreyash Sonthalia, Genevieve Stein-O’Brien, Luo Xiao, Brian Caffo, Carlo Colantuoni

ORCID

Structured Joint Decomposition (SJD) identifies conserved molecular dynamics across collections of biologically related multi-omics data matrices

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Alex M. Casella, Teresa M. Przytycka, Carlo Colantuoni

ORCID

, Seth A. Ament

Identifying enhancer properties associated with genetic risk for complex traits using regulome-wide association studies

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Seth A. Ament, Marcia Cortes-Gutierrez, Brian R. Herb, Evelina Mocci, Carlo Colantuoni

ORCID

, Margaret M. McCarthy

Early-childhood inflammation blunts the transcriptional maturation of cerebellar neurons

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Huan Chen, Brian Caffo, Genevieve Stein-O’Brien, Jinrui Liu, Ben Langmead, Carlo Colantuoni

ORCID

, Luo Xiao

Two-stage linked component analysis for joint decomposition of multiple biologically related data sets

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2021 Alex M. Casella, Carlo Colantuoni

ORCID

, Seth A. Ament

Regulome-wide association study identifies enhancer properties associated with risk for schizophrenia

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Sonia Malaiya, Marcia Cortes-Gutierrez, Brian R. Herb, Sydney R. Coffey, Samuel R. W. Legg, Jeffrey P. Cantle, Carlo Colantuoni

ORCID

, Jeffrey B. Carroll, Seth A. Ament

Single-Nucleus RNA-Seq Reveals Dysregulation of Striatal Cell Identity Due to Huntington's Disease Mutations

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2020 David W. Nauen

ORCID

, Michael C. Haffner, Juyun Kim, Qizhi Zheng, Hao Yin, Angelo M. DeMarzo, Vasiliki Machairaki, Vasiliki Mahairaki, Carlo Colantuoni

ORCID

, J. Geoffrey Pickering, J. Geoffrey Pickering

ORCID

, Tory P. Johnson

Putative Autoantigen Leiomodin-1 Is Expressed in the Human Brain and in the Membrane Fraction of Newly Formed Neurons

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Michelle N. Sullivan, Lisa M. Mangus, Yea Ji Jeong, Clarisse V. Solis, Audrey C. Knight, Gizem Keceli, Nazareno Paolocci, Suzanne E. Queen, Samuel A. Brill, Joseph L. Mankowski, Carlo Colantuoni

ORCID

Upregulation of Superoxide Dismutase 2 by Astrocytes in the SIV/Macaque Model of HIV-Associated Neurologic Disease

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Nicola Micali, Suel-Kee Kim, Marcelo Diaz-Bustamante, Genevieve Stein-O’Brien, Seungmae Seo, Joo-Heon Shin, Brian G. Rash, Shaojie Ma

ORCID

, Yanhong Wang, Nicolas A. Olivares, Kristen R. Maynard, Elana J. Fertig, Alan J. Cross, Daniel R. Weinberger, Daniel J. Hoeppner and 8 other authors

Variation of Human Neural Stem Cells Generating Organizer States In Vitro before Committing to Cortical Excitatory or Inhibitory Neuronal Fates

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Gaurav Sharma, Loyal A. Goff, Elana J. Fertig

ORCID

, Genevieve Stein-O’Brien, Carlo Colantuoni

ORCID

projectR: An R/Bioconductor package for transfer learning via PCA, NMF, correlation, and clustering

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2019 Jesper R. Gådin, Andrew E. Jaffe, Jacob Nielsen, Joo-Heon Shin, Thomas M. Hyde, Joel E. Kleinman, Niels Plath, Per Eriksson, Michael Didriksen, Daniel R. Weinberger, Alfonso Buil, Lasse Folkersen, Carlo Colantuoni

ORCID

, Søren Brunak

Comparison of quantitative trait loci methods: Total expression and allelic imbalance method in brain RNA-seq

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2018 Stein O'Brien Gl, Genevieve L. Stein-O'Brien

ORCID

, Thomas Sherman, Christina Zibetti, Qiwen Hu, Rachel Sealfon, Sheng Liu, Jiang Qian, Loyal A. Goff

ORCID

, Goff La, Fertig Ej, Elana J. Fertig

ORCID

, Clark Bs, Brian S. Clark

ORCID

, Seth Blackshaw

ORCID

and 1 other authors

Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species.

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Emily E. Burke, Joo Heon Shin, Leonardo Collado-Torres

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, Suel-Kee Kim, Nicola Micali, Yanhong Wang

ORCID

, Richard E. Straub, Daniel J. Hoeppner

ORCID

, Alana Lescure, Alana Sellers, Kamel Shibbani, Gregory R. Hamersky, Marcelo Diaz Bustamante, BaDoi N. Phan

ORCID

, William S. Ulrich and 23 other authors

Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

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Andrew E. Jaffe, Richard E. Straub, Joo Heon Shin, Ran Tao, Yuan Gao, Leonardo Collado-Torres, Tony Kam-Thong, Hualin S. Xi, Jie Quan, William S. Ulrich, Brady J. Maher, Amy Deep-Soboslay, Alan J. Cross, Jeffrey T. Leek, Thomas M. Hyde and 5 other authors

Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis

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Gianluca Ursini, Giovanna Punzi, Stefano Marenco, Joshua F. Robinson, Annamaria Porcelli, Emily G. Hamilton, Marina Mitjans, Giancarlo Maddalena, Jan Seidel, Hidenaga Yanamori, Andrew E. Jaffe

ORCID

, Michael F. Egan, Richard E. Straub, Ryota Hashimoto

ORCID

, Dan Rujescu and 8 other authors

Convergence of placenta biology and genetic risk for schizophrenia

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2017 Jocelynn R. Pearl, Cory C. Funk, Paul Shannon, Rediet T. Oshone, Leroy Hood, Nathan D. Price, Dani E. Bergey, Bijoya Basu, Alex M. Casella, Carlo Colantuoni

ORCID

, Seth A. Ament

Genome-scale transcriptional regulatory network models of psychiatric and neurodegenerative disorders

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2016 Genevieve L. Stein-O'Brien, Wai-Shing Lee, Michael Considine, Alexander V. Favorov, Emily Flam, Theresa Guo, Sijia Li, Lucy Li, Luigi Marchionni, Thomas Sherman, Shawn Sivy, Daria A. Gaykalova, Ronald D. McKay, Michael F. Ochs, Jacob L. Carey and 2 other authors

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF

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Y. Horiuchi

ORCID

, M. A. Kondo, K. Okada, Y. Takayanagi, T. Tanaka, T. Ho, M. Varvaris, K. Tajinda, H. Hiyama, K. Ni, D. Schretlen, J. Pevsner, Carlo Colantuoni

ORCID

, N. G. Cascella, K. Ishizuka and 1 other authors

Molecular signatures associated with cognitive deficits in schizophrenia: a study of biopsied olfactory neural epithelium

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