All papers authored by José P. Faria
Refreshing results…
2023
José P. Faria 
,
Filipe Liu,
Janaka N. Edirisinghe,
Nidhi Gupta,
Sam Seaver,
Andrew P. Freiburger,
Qizhi Zhang,
Pamela Weisenhorn,
Neal Conrad,
Raphy Zarecki,
Others
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,
Filipe Liu,
Janaka N. Edirisinghe,
Nidhi Gupta,
Sam Seaver,
Andrew P. Freiburger,
Qizhi Zhang,
Pamela Weisenhorn,
Neal Conrad,
Raphy Zarecki,
Others
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Michael Shaffer ,
Kelly C. Wrighton ,
Mikayla A. Borton,
Ben Bolduc,
José P. Faria ,
Rory M. Flynn,
Parsa Ghadermazi,
Janaka N. Edirisinghe,
Elisha M. Wood-Charlson,
Christopher S. Miller ,
Siu Hung Joshua Chan ,
Matthew B. Sullivan ,
Christopher S. Henry,
Others
,
Kelly C. Wrighton ,
Mikayla A. Borton,
Ben Bolduc,
José P. Faria ,
Rory M. Flynn,
Parsa Ghadermazi,
Janaka N. Edirisinghe,
Elisha M. Wood-Charlson,
Christopher S. Miller ,
Siu Hung Joshua Chan ,
Matthew B. Sullivan ,
Christopher S. Henry,
Others
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase
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2022
Mikayla Borton,
Kelly Wrighton,
Boris Sadkhin,
Christopher Henry,
Elisha Wood-Charlson,
Filipe Liu,
Janaka Edirisinghe,
Jose Pedro Lopes Faria ,
Shane Cannon
,
Shane Cannon
GROWdb US River Systems-Samples
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2020
Samuel M. D. Seaver ,
Filipe Liu ,
Qizhi Zhang,
James Jeffryes ,
José P. Faria ,
Janaka N. Edirisinghe ,
Michael Mundy ,
Aaron A. Best ,
Nicholas Chia ,
Matthew DeJongh ,
Jeffrey A. Kimbrel ,
Elad Noor ,
Patrik D’haeseleer,
Moritz E. Beber ,
Sean R. McCorkle
and 8 other authors
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,
Filipe Liu ,
Qizhi Zhang,
James Jeffryes ,
José P. Faria ,
Janaka N. Edirisinghe ,
Michael Mundy ,
Aaron A. Best ,
Nicholas Chia ,
Matthew DeJongh ,
Jeffrey A. Kimbrel ,
Elad Noor ,
Patrik D’haeseleer,
Moritz E. Beber ,
Sean R. McCorkle
and 8 other authors
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Nidhi Gupta,
Kelly A. Skinner,
Zarath M. Summers,
Janaka N. Edirisinghe,
Pamela B. Weisenhorn,
José P. Faria ,
Christopher W. Marshall,
Anukriti Sharma,
Neil R. Gottel,
Jack A. Gilbert,
Christopher S. Henry,
Others,
Edward J. O’Loughlin
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,
Christopher W. Marshall,
Anukriti Sharma,
Neil R. Gottel,
Jack A. Gilbert,
Christopher S. Henry,
Others,
Edward J. O’Loughlin
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Fernando Cruz ,
José P. Faria ,
Miguel Rocha,
Isabel Rocha,
Oscar Dias
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,
José P. Faria ,
Miguel Rocha,
Isabel Rocha,
Oscar Dias
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Nidhi Gupta,
Kelly A. Skinner,
Zarath M. Summers,
Janaka N. Edirisinghe,
José P. Faria ,
Christopher W. Marshall,
Anukriti Sharma,
Neil R. Gottel,
Jack A. Gilbert,
Christopher S. Henry,
Others,
Edward J. O’Loughlin
Download from journals.asm.org
,
Christopher W. Marshall,
Anukriti Sharma,
Neil R. Gottel,
Jack A. Gilbert,
Christopher S. Henry,
Others,
Edward J. O’Loughlin
Download from journals.asm.org
Nidhi Gupta,
Kelly A. Skinner,
Zarath M. Summers,
Janaka N. Edirisinghe,
José P. Faria ,
Christopher W. Marshall,
Anukriti Sharma,
Neil R. Gottel,
Jack A. Gilbert,
Christopher S. Henry,
Others,
Edward J. O’Loughlin
,
Christopher W. Marshall,
Anukriti Sharma,
Neil R. Gottel,
Jack A. Gilbert,
Christopher S. Henry,
Others,
Edward J. O’Loughlin
Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium
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José P. Faria ,
Miguel Rocha,
Isabel Rocha,
Christopher S. Henry
,
Miguel Rocha,
Isabel Rocha,
Christopher S. Henry
Methods for automated genome-scale metabolic model reconstruction
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Wout van Helvoirt ,
Moritz Emanuel Beber ,
Christian Lieven ,
Brett G. Olivier,
Frank T. Bergmann ,
Jennifer A. Bartell ,
Lars M. Blank ,
Beber Me,
Birgitta Elisabeth Ebert ,
Janaka N. Edirisinghe ,
Olivier Bg,
Meric Ataman ,
Jose P. Faria ,
Adam Feist ,
Georgios Fengos
and 60 other authors
,
Moritz Emanuel Beber ,
Christian Lieven ,
Brett G. Olivier,
Frank T. Bergmann ,
Jennifer A. Bartell ,
Lars M. Blank ,
Beber Me,
Birgitta Elisabeth Ebert ,
Janaka N. Edirisinghe ,
Olivier Bg,
Meric Ataman ,
Jose P. Faria ,
Adam Feist ,
Georgios Fengos
and 60 other authors
Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite
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2016
José Pedro Faria ,
James J. Davis,
Janaka N. Edirisinghe,
Ronald C. Taylor,
Pamela B. Weisenhorn,
Robert D. Olson,
Rick L. Stevens,
Miguel Rocha,
Matthew DeJongh,
Isabel Rocha,
Nathan L. Tintle,
Aaron A. Best,
Bruce Parrello,
Bruce Parrelo,
Ross Overbeek
and 2 other authors
,
James J. Davis,
Janaka N. Edirisinghe,
Ronald C. Taylor,
Pamela B. Weisenhorn,
Robert D. Olson,
Rick L. Stevens,
Miguel Rocha,
Matthew DeJongh,
Isabel Rocha,
Nathan L. Tintle,
Aaron A. Best,
Bruce Parrello,
Bruce Parrelo,
Ross Overbeek
and 2 other authors
Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation
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2015
José Pedro Lopes Faria
Modeling Microbes: New Methods for Integrated Metabolic and Regulatory Network Reconstruction
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