Jordi Abante Llenas

All papers authored by Jordi Abante Llenas

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2023 Alex Meléndez, Cayetana López, David Bonet, Gerard Sant, Daniel Mas Montserrat, Jordi Abante

, Manuel Rivas, Ferran Marqués, Alexander G. Ioannidis

Assessing Tree-Based Phenotype Prediction on the UK Biobank

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2022 J. Abante

, P. L. Wang, J. Salzman

DIVE: a reference-free statistical approach to diversity-generating & mobile genetic element discovery

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This paper is made freely available by the publisher.

2021 Jordi Abante

, Sandeep Kambhampati, Andrew P. Feinberg, John Goutsias

Estimating DNA methylation potential energy landscapes from nanopore sequencing data

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Michael A. Koldobskiy, Garrett Jenkinson

, Jordi Abante

, Varenka A. Rodriguez DiBlasi, Weiqiang Zhou, Elisabet Pujadas

, Adrian Idrizi, Rakel Tryggvadottir, Colin Callahan, Challice L. Bonifant

, Karen R. Rabin

, Patrick A. Brown

, Hongkai Ji

, John Goutsias

, Andrew P. Feinberg

Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis

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2020 Jordi Abante

, John Goutsias

CpelTdm.jl: a Julia package for targeted differential DNA methylation analysis

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J. Abante

, Y. Fang

, A. P. Feinberg

, J. Goutsias

Detection of haplotype-dependent allele-specific DNA methylation in WGBS data

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Michael A. Koldobskiy, Jordi Abante

, Garrett Jenkinson

, Elisabet Pujadas

, Ashley Tetens, Feifei Zhao, Rakel Tryggvadottir, Adrian Idrizi, Andreas Reinisch, Ravindra Majeti

, John Goutsias, Andrew P. Feinberg

A Dysregulated DNA Methylation Landscape Linked to Gene Expression in MLL-Rearranged AML

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2019 Gerard J. P. van Westen, Michael P. Menden, Dennis Wang, Thomas Yu, Russ Wolfinger, Mikhail Zaslavskiy, Robert Vogel, Mariana Pelicano de Almeida, Ewoud De Troyer, Li Zeng, Bhagya Wijayawardena, Hector Zenil, Daniel Vis, Andrey Voronkov, Frederick Zhang and 357 other authors

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

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Chenxi Qiu, Huiyan Jin, Irina Vvedenskaya, Jordi Abante Llenas

, Tingting Zhao, Indranil Malik, Alex M. Visbisky, Scott L. Schwartz, Ping Cui, Pavel Čabart, Kang Hoo Han, William K. M. Lai, Richard P. Metz, Charles D. Johnson, Sing-Hoi Sze and 3 other authors

Promoter scanning during transcription initiation in Saccharomyces cerevisiae: Pol II in the “shooting gallery”

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Garrett Jenkinson, Jordi Abante

, Michael A. Koldobskiy, Andrew P. Feinberg, John Goutsias

Ranking genomic features using an information-theoretic measure of epigenetic discordance

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2018 Garrett Jenkinson, Jordi Abante

, Andrew P. Feinberg, John Goutsias

An information-theoretic approach to the modeling and analysis of whole-genome bisulfite sequencing data

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2017 Jordi Abante

, Noushin Ghaffari, Charles D. Johnson, Aniruddha Datta

HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

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2016 Noushin Ghaffari, Jordi Abante

, Raminder Singh, Philip D. Blood, Charles D. Johnson

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data

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All papers authored by Jordi Abante Llenas