Jordi Abante Llenas

All papers authored by Jordi Abante Llenas

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2023 Alex Meléndez, Cayetana López, David Bonet, Gerard Sant, Daniel Mas Montserrat, Jordi Abante

, Manuel Rivas, Ferran Marqués, Alexander G. Ioannidis

Assessing Tree-Based Phenotype Prediction on the UK Biobank

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2022 J. Abante

, P. L. Wang, J. Salzman

DIVE: a reference-free statistical approach to diversity-generating & mobile genetic element discovery

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This paper is made freely available by the publisher.

2021 Jordi Abante

, Sandeep Kambhampati, Andrew P. Feinberg, John Goutsias

Estimating DNA methylation potential energy landscapes from nanopore sequencing data

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Michael A. Koldobskiy, Garrett Jenkinson

, Jordi Abante

, Varenka A. Rodriguez DiBlasi, Weiqiang Zhou, Elisabet Pujadas

, Adrian Idrizi, Rakel Tryggvadottir, Colin Callahan, Challice L. Bonifant

, Karen R. Rabin

, Patrick A. Brown

, Hongkai Ji

, John Goutsias

, Andrew P. Feinberg

Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis

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2020 Jordi Abante

, John Goutsias

CpelTdm.jl: a Julia package for targeted differential DNA methylation analysis

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J. Abante

, Y. Fang

, A. P. Feinberg

, J. Goutsias

Detection of haplotype-dependent allele-specific DNA methylation in WGBS data

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Michael A. Koldobskiy, Jordi Abante

, Garrett Jenkinson

, Elisabet Pujadas

, Ashley Tetens, Feifei Zhao, Rakel Tryggvadottir, Adrian Idrizi, Andreas Reinisch, Ravindra Majeti

, John Goutsias, Andrew P. Feinberg

A Dysregulated DNA Methylation Landscape Linked to Gene Expression in MLL-Rearranged AML

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2019 Dennis Wang, Thomas Yu, Russ Wolfinger, Ewoud De Troyer, Mikhail Zaslavskiy, Robert Vogel, Bence Szalai, Mariana Pelicano de Almeida, Bhagya Wijayawardena, Eric K. Y. Tang, Gustavo Stolovitzky, Julio Saez-Rodriguez, Giovanni Y. Di Veroli, Victoria Romeo Aznar, Michael P. Menden and 357 other authors

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

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Chenxi Qiu, Huiyan Jin, Irina Vvedenskaya, Jordi Abante Llenas

, Tingting Zhao, Indranil Malik, Alex M. Visbisky, Scott L. Schwartz, Ping Cui, Pavel Čabart, Kang Hoo Han, William K. M. Lai, Richard P. Metz, Charles D. Johnson, Sing-Hoi Sze and 3 other authors

Promoter scanning during transcription initiation in Saccharomyces cerevisiae: Pol II in the “shooting gallery”

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Garrett Jenkinson, Jordi Abante

, Michael A. Koldobskiy, Andrew P. Feinberg, John Goutsias

Ranking genomic features using an information-theoretic measure of epigenetic discordance

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2018 Garrett Jenkinson, Jordi Abante

, Andrew P. Feinberg, John Goutsias

An information-theoretic approach to the modeling and analysis of whole-genome bisulfite sequencing data

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2017 Jordi Abante

, Noushin Ghaffari, Charles D. Johnson

, Aniruddha Datta

HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

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2016 Noushin Ghaffari, Jordi Abante

, Raminder Singh, Philip D. Blood, Charles D. Johnson

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data

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All papers authored by Jordi Abante Llenas