All papers authored by Javier Mendoza-Revilla
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2024
Bernardo P. de Almeida,
Hugo Dalla-Torre,
Guillaume Richard,
Christopher Blum,
Lorenz Hexemer,
Maxence Gelard,
Javier Mendoza-Revilla 
,
Priyanka Pandey,
Stefan Laurent,
Marie Lopez,
Alexandre Laterre,
Maren Lang,
Ugur Sahin,
Karim Beguir,
Thomas Pierrot
,
Priyanka Pandey,
Stefan Laurent,
Marie Lopez,
Alexandre Laterre,
Maren Lang,
Ugur Sahin,
Karim Beguir,
Thomas Pierrot
SegmentNT: annotating the genome at single-nucleotide resolution with DNA foundation models
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2023
Javier Mendoza-Revilla ,
Evan Trop,
Liam Gonzalez,
Masa Roller,
Hugo Dalla-Torre,
Bernardo P. de Almeida,
Guillaume Richard,
Jonathan Caton,
Nicolas Lopez Carranza,
Marcin Skwark,
Alex Laterre,
Karim Beguir,
Thomas Pierrot,
Marie Lopez
,
Evan Trop,
Liam Gonzalez,
Masa Roller,
Hugo Dalla-Torre,
Bernardo P. de Almeida,
Guillaume Richard,
Jonathan Caton,
Nicolas Lopez Carranza,
Marcin Skwark,
Alex Laterre,
Karim Beguir,
Thomas Pierrot,
Marie Lopez
A Foundational Large Language Model for Edible Plant Genomes
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Yann Aquino ,
Aurélie Bisiaux ,
Zhi Li ,
Mary O’Neill,
Javier Mendoza-Revilla ,
Sarah Hélène Merkling ,
Gaspard Kerner ,
Milena Hasan ,
Valentina Libri,
Vincent Bondet ,
Nikaïa Smith ,
Camille de Cevins,
Mickaël Ménager ,
Francesca Luca,
Roger Pique-Regi
and 16 other authors
,
Aurélie Bisiaux ,
Zhi Li ,
Mary O’Neill,
Javier Mendoza-Revilla ,
Sarah Hélène Merkling ,
Gaspard Kerner ,
Milena Hasan ,
Valentina Libri,
Vincent Bondet ,
Nikaïa Smith ,
Camille de Cevins,
Mickaël Ménager ,
Francesca Luca,
Roger Pique-Regi
and 16 other authors
Dissecting human population variation in single-cell responses to SARS-CoV-2
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Hugo Dalla-Torre,
Liam Gonzalez,
Javier Mendoza-Revilla ,
Nicolas Lopez Carranza,
Adam Henryk Grzywaczewski,
Francesco Oteri,
Christian Dallago,
Evan Trop,
Bernardo P. de Almeida,
Hassan Sirelkhatim,
Guillaume Richard,
Marcin Skwark,
Karim Beguir,
Marie Lopez,
Thomas Pierrot
,
Nicolas Lopez Carranza,
Adam Henryk Grzywaczewski,
Francesco Oteri,
Christian Dallago,
Evan Trop,
Bernardo P. de Almeida,
Hassan Sirelkhatim,
Guillaume Richard,
Marcin Skwark,
Karim Beguir,
Marie Lopez,
Thomas Pierrot
The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
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2022
Yann Aquino,
Aurélie Bisiaux ,
Zhi Li ,
Mary O’Neill,
Javier Mendoza-Revilla ,
Sarah Hélène Merkling,
Gaspard Kerner,
Milena Hasan ,
Valentina Libri ,
Vincent Bondet,
Nikaïa Smith,
Camille de Cevins,
Mickaël Ménager,
Francesca Luca,
Roger Pique-Regi
and 18 other authors
,
Zhi Li ,
Mary O’Neill,
Javier Mendoza-Revilla ,
Sarah Hélène Merkling,
Gaspard Kerner,
Milena Hasan ,
Valentina Libri ,
Vincent Bondet,
Nikaïa Smith,
Camille de Cevins,
Mickaël Ménager,
Francesca Luca,
Roger Pique-Regi
and 18 other authors
Environmental and genetic drivers of population differences in SARS-CoV-2 immune responses
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Lara R. Arauna,
Jacob Bergstedt,
Jeremy Choin,
Javier Mendoza-Revilla ,
Christine Harmant,
Maguelonne Roux,
Alex Mas-Sandoval,
Laure Lémée,
Heidi Colleran,
Alexandre François,
Frédérique Valentin ,
Olivier Cassar,
Antoine Gessain,
Lluis Quintana-Murci,
Etienne Patin
,
Christine Harmant,
Maguelonne Roux,
Alex Mas-Sandoval,
Laure Lémée,
Heidi Colleran,
Alexandre François,
Frédérique Valentin ,
Olivier Cassar,
Antoine Gessain,
Lluis Quintana-Murci,
Etienne Patin
The genomic landscape of contemporary western Remote Oceanians
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2021
Javier Mendoza-Revilla ,
Caio C. Silva de Cerqueira,
Juan Camilo Chacón-Duque ,
Macarena Fuentes-Guajardo ,
Louise Ormond,
Ke Wang,
Malena Hurtado,
Valeria Villegas,
Vanessa Granja,
Victor Acuña-Alonzo,
Claudia Jaramillo,
William Arias,
Rodrigo Barquera,
Rodrigo Barquera Lozano,
Jorge Gomez-Valdes
and 25 other authors
,
Caio C. Silva de Cerqueira,
Juan Camilo Chacón-Duque ,
Macarena Fuentes-Guajardo ,
Louise Ormond,
Ke Wang,
Malena Hurtado,
Valeria Villegas,
Vanessa Granja,
Victor Acuña-Alonzo,
Claudia Jaramillo,
William Arias,
Rodrigo Barquera,
Rodrigo Barquera Lozano,
Jorge Gomez-Valdes
and 25 other authors
Disentangling signatures of selection before and after European colonization in Latin Americans
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Y. Chen ,
C. C. S. de Cerqueira,
M. André ,
K. Adhikari ,
M. Blin,
B. Bonfante ,
J. Mendoza‐Revilla ,
M. Fuentes‐Guajardo ,
S. Palmal ,
J. C. Chacón‐Duque ,
M. Hurtado,
V. Villegas,
V. Granja,
C. Jaramillo,
W. Arias
and 23 other authors
Download from onlinelibrary.wiley.com
,
C. C. S. de Cerqueira,
M. André ,
K. Adhikari ,
M. Blin,
B. Bonfante ,
J. Mendoza‐Revilla ,
M. Fuentes‐Guajardo ,
S. Palmal ,
J. C. Chacón‐Duque ,
M. Hurtado,
V. Villegas,
V. Granja,
C. Jaramillo,
W. Arias
and 23 other authors
Download from onlinelibrary.wiley.com
Sagnik Palmal,
Caio Cesar Silva de Cerqueira,
Kaustubh Adhikari,
Javier Mendoza-Revilla ,
Macarena Fuentes-Guajardo ,
Caio Cesar Silva de Cerqueira,
Betty Bonfante,
Juan Camilo Chacón-Duque ,
Anood Sohail,
Malena Hurtado,
Valeria Villegas,
Vanessa Granja,
Claudia Jaramillo,
William Arias ,
Rodrigo Barquera Lozano
and 21 other authors
,
Macarena Fuentes-Guajardo ,
Caio Cesar Silva de Cerqueira,
Betty Bonfante,
Juan Camilo Chacón-Duque ,
Anood Sohail,
Malena Hurtado,
Valeria Villegas,
Vanessa Granja,
Claudia Jaramillo,
William Arias ,
Rodrigo Barquera Lozano
and 21 other authors
Prediction of eye, hair and skin colour in Latin Americans
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Jeremy Choin ,
Javier Mendoza-Revilla ,
Lara R. Arauna ,
Sebastian Cuadros-Espinoza,
Olivier Cassar,
Maximilian Larena ,
Albert Min-Shan Ko,
Christine Harmant,
Romain Laurent,
Paul Verdu,
Guillaume Laval,
Anne Boland ,
Robert Olaso ,
Jean-François Deleuze ,
Frédérique Valentin
and 7 other authors
,
Javier Mendoza-Revilla ,
Lara R. Arauna ,
Sebastian Cuadros-Espinoza,
Olivier Cassar,
Maximilian Larena ,
Albert Min-Shan Ko,
Christine Harmant,
Romain Laurent,
Paul Verdu,
Guillaume Laval,
Anne Boland ,
Robert Olaso ,
Jean-François Deleuze ,
Frédérique Valentin
and 7 other authors
Genomic insights into population history and biological adaptation in Oceania
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Betty Bonfante ,
Caio C. Silva de Cerqueira,
Pierre Faux ,
Nicolas Navarro ,
Javier Mendoza-Revilla ,
Morgane Dubied ,
Charlotte Montillot,
Emma Wentworth,
Lauriane Poloni,
Ceferino Varón-González ,
Philip Jones,
Ziyi Xiong,
Macarena Fuentes-Guajardo ,
Sagnik Palmal,
Juan Camilo Chacón-Duque
and 45 other authors
Download from doi.org
,
Caio C. Silva de Cerqueira,
Pierre Faux ,
Nicolas Navarro ,
Javier Mendoza-Revilla ,
Morgane Dubied ,
Charlotte Montillot,
Emma Wentworth,
Lauriane Poloni,
Ceferino Varón-González ,
Philip Jones,
Ziyi Xiong,
Macarena Fuentes-Guajardo ,
Sagnik Palmal,
Juan Camilo Chacón-Duque
and 45 other authors
Download from doi.org
2019
Kaustubh Adhikari,
Javier Mendoza-Revilla ,
Anood Sohail,
Macarena Fuentes-Guajardo ,
Jodie Lampert,
Juan Camilo Chacón-Duque ,
Malena Hurtado,
Valeria Villegas,
Vanessa Granja,
Victor Acuña-Alonzo,
Claudia Jaramillo,
William Arias ,
Rodrigo Barquera Lozano,
Rodrigo Barquera Lozano,
Paola Everardo
and 19 other authors
Download from www.nature.com
,
Anood Sohail,
Macarena Fuentes-Guajardo ,
Jodie Lampert,
Juan Camilo Chacón-Duque ,
Malena Hurtado,
Valeria Villegas,
Vanessa Granja,
Victor Acuña-Alonzo,
Claudia Jaramillo,
William Arias ,
Rodrigo Barquera Lozano,
Rodrigo Barquera Lozano,
Paola Everardo
and 19 other authors
Download from www.nature.com
2018
Lucy van Dorp ,
Sara Lowes,
Jonathan L. Weigel,
Naser Ansari-Pour ,
Saioa López,
Javier Mendoza-Revilla ,
James A. Robinson,
Joseph Henrich,
Mark G. Thomas ,
Nathan Nunn,
Garrett Hellenthal
,
Sara Lowes,
Jonathan L. Weigel,
Naser Ansari-Pour ,
Saioa López,
Javier Mendoza-Revilla ,
James A. Robinson,
Joseph Henrich,
Mark G. Thomas ,
Nathan Nunn,
Garrett Hellenthal
Genetic legacy of state centralization in the Kuba Kingdom of the Democratic Republic of the Congo
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Juan-Camilo Chacón-Duque ,
Kaustubh Adhikari ,
Macarena Fuentes-Guajardo ,
Javier Mendoza-Revilla ,
Victor Acuña-Alonzo,
Rodrigo Barquera ,
Mirsha Quinto-Sánchez,
Jorge Gomez-Valdes,
Jorge Gómez-Valdés ,
Paola Everardo Martínez ,
Hugo Villamil-Ramírez,
Tabita Hunemeier,
Tábita Hünemeier,
Virginia Ramallo,
Caio C. Silva de Cerqueira
and 38 other authors
Download from www.nature.com
,
Kaustubh Adhikari ,
Macarena Fuentes-Guajardo ,
Javier Mendoza-Revilla ,
Victor Acuña-Alonzo,
Rodrigo Barquera ,
Mirsha Quinto-Sánchez,
Jorge Gomez-Valdes,
Jorge Gómez-Valdés ,
Paola Everardo Martínez ,
Hugo Villamil-Ramírez,
Tabita Hunemeier,
Tábita Hünemeier,
Virginia Ramallo,
Caio C. Silva de Cerqueira
and 38 other authors
Download from www.nature.com
Nicolás Montalva ,
Kaustubh Adhikari ,
Anke Liebert,
Javier Mendoza‐Revilla ,
Sergio V. Flores,
Ruth Mace,
Dallas M. Swallow
Download from api.wiley.com
,
Kaustubh Adhikari ,
Anke Liebert,
Javier Mendoza‐Revilla ,
Sergio V. Flores,
Ruth Mace,
Dallas M. Swallow
Download from api.wiley.com
2017
Kaustubh Adhikari,
Juan Camilo Chacón-Duque ,
Javier Mendoza-Revilla ,
Macarena Fuentes-Guajardo,
Andrés Ruiz-Linares
,
Javier Mendoza-Revilla ,
Macarena Fuentes-Guajardo,
Andrés Ruiz-Linares
The Genetic Diversity of the Americas
Download from www.annualreviews.org
2016
Kaustubh Adhikari,
Javier Mendoza-Revilla ,
Jc Chacón-Duque ,
Macarena Fuentes-Guajardo ,
Andrés Ruiz-Linares
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,
Jc Chacón-Duque ,
Macarena Fuentes-Guajardo ,
Andrés Ruiz-Linares
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Lr Arauna,
Javier Mendoza-Revilla ,
Alex Mas-Sandoval,
Hassan Izaabel,
Asmahan Bekada,
Soraya Benhamamouch,
Karima Fadhlaoui-Zid,
Pierre Zalloua,
Garrett Hellenthal,
David Comas
,
Alex Mas-Sandoval,
Hassan Izaabel,
Asmahan Bekada,
Soraya Benhamamouch,
Karima Fadhlaoui-Zid,
Pierre Zalloua,
Garrett Hellenthal,
David Comas
Recent historical migrations have shaped the gene pool of Arabs and Berbers in North Africa
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Kaustubh Adhikari,
Macarena Fuentes-Guajardo ,
Mirsha Quinto-Sánchez,
Javier Mendoza-Revilla ,
Juan Camilo Chacón-Duque ,
Juan Camilo Chacon-Duque,
Victor Acuña-Alonzo,
Claudia Jaramillo,
William Arias ,
Rodrigo Barquera Lozano,
Rodrigo Barquera Lozano,
Gaston Macin Perez,
Gastón Macín Pérez,
Jorge Gómez-Valdés,
Jorge Gomez-Valdes
and 21 other authors
Download from www.nature.com
,
Mirsha Quinto-Sánchez,
Javier Mendoza-Revilla ,
Juan Camilo Chacón-Duque ,
Juan Camilo Chacon-Duque,
Victor Acuña-Alonzo,
Claudia Jaramillo,
William Arias ,
Rodrigo Barquera Lozano,
Rodrigo Barquera Lozano,
Gaston Macin Perez,
Gastón Macín Pérez,
Jorge Gómez-Valdés,
Jorge Gomez-Valdes
and 21 other authors
Download from www.nature.com
Kaustubh Adhikari,
Tania Fontanil,
Santiago Cal,
Javier Mendoza-Revilla ,
Macarena Fuentes-Guajardo ,
Juan-Camilo Chacón-Duque ,
Farah Al-Saadi,
Jeanette A. Johansson ,
Mirsha Quinto-Sanchez,
Victor Acuña-Alonzo,
Claudia Jaramillo,
William Arias ,
Rodrigo Barquera Lozano,
Rodrigo Barquera Lozano,
Gastón Macín Pérez
and 25 other authors
Download from www.nature.com
,
Macarena Fuentes-Guajardo ,
Juan-Camilo Chacón-Duque ,
Farah Al-Saadi,
Jeanette A. Johansson ,
Mirsha Quinto-Sanchez,
Victor Acuña-Alonzo,
Claudia Jaramillo,
William Arias ,
Rodrigo Barquera Lozano,
Rodrigo Barquera Lozano,
Gastón Macín Pérez
and 25 other authors
Download from www.nature.com
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