Researcher
James Bonfield
Wellcome Trust Sanger Institute
Statistics
34 papers found
All papers authored by James Bonfield
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Angela J. H. Page ,
Lindsay Smith ,
Jeremy B. Adams ,
Gil Alterovitz,
Lawrence J. Babb ,
Maxmillian P. Barkley,
Michael Baudis ,
Michael J. S. Beauvais ,
Tim Beck ,
Jacques S. Beckmann ,
Sergi Beltran ,
David Bernick,
Alexander Bernier,
James K. Bonfield
and 187 other authors
GA4GH: International policies and standards for data sharing across genomic research and healthcare
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John Marshall ,
Petr Danecek ,
Heng Li ,
Valeriu Ohan ,
Andrew Whitwham ,
Thomas Keane ,
Robert M. Davies
HTSlib: C library for reading/writing high-throughput sequencing data
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James K. Bonfield ,
Jennifer Liddle ,
John Marshall ,
Valeriu Ohan ,
Martin O. Pollard ,
Andrew Whitwham ,
Thomas Keane ,
Shane A. McCarthy ,
Robert M. Davies ,
Heng Li
Twelve years of SAMtools and BCFtools
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Shane A. McCarthy ,
Richard A. Durbin
Crumble: reference free lossy compression of sequence quality values
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Robert M. Davies,
German Tischler,
David K. Jackson ,
Thomas M. Keane ,
Jing Li ,
Jia-Xing Yue ,
Gianni Liti,
Richard Durbin ,
Zemin Ning
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms
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Faraz Hach ,
Jan Voges,
Jörn Ostermann,
Claudio Alberti,
Marco Mattavelli,
S. Cenk Sahinalp
Comparison of high-throughput sequencing data compression tools
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Bastien Chevreux,
Heng Li
SAM/BAM format v1. 5 extensions for de novo assemblies
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Matthew V. Mahoney
Compression of FASTQ and SAM Format Sequencing Data
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,
Andrew Whitwham
Gap5—editing the billion fragment sequence assembly
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Sean Humphray,
Bob Plumb,
Matthew C. Jones,
Michael A. Quail,
Stephen Rice,
Tony Cox,
Rob Davies ,
James Bonfield ,
Thomas M. Keane ,
Michael Nefedov,
Pieter J. de Jong,
Paul Lyons,
Linda Wicker,
John Todd
and 7 other authors
Genome-wide end-sequenced BAC resources for the NOD/MrkTac☆ and NOD/ShiLtJ☆☆ mouse genomes
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James Bonfield ,
Lawrence Bower,
Matt Corbett,
Ying Cheng,
Fehmi Demiralp,
Nadeem Faruque,
Richard Gibson ,
Neil Goodgame,
Gemma Hoad,
Christopher Hunter ,
Mikyung Jang,
Steven Leonard
and 14 other authors
Improvements to services at the European Nucleotide Archive
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,
Lawrence Bower,
Fehmi Demiralp,
Nadeem Faruque,
Richard Gibson ,
Gemma Hoad,
Tim Hubbard,
Christopher Hunter ,
Mikyung Jang,
Szilveszter Juhos,
Rasko Leinonen,
Steven Leonard,
R. López
and 14 other authors
Petabyte-scale innovations at the European Nucleotide Archive
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,
Lawrence Bower,
Paul Browne,
Matias Castro,
Tony Cox,
Fehmi Demiralp,
Ruth Eberhardt,
Nadeem Faruque
and 22 other authors
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,
James K. Bonfield ,
Frances Law,
Sean Humphray,
Bob Plumb,
Pentao Liu,
Jane Rogers,
Allan Bradley
A genome-wide, end-sequenced 129Sv BAC library resource for targeting vector construction
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,
Ruby Banerjee,
James Bonfield ,
James C. Mullikin,
Yeun Jun Chung,
Jane Rogers,
Allan Bradley
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Sarah J. Lindsay,
Matthew E. Hurles
Shotgun haplotyping: a novel method for surveying allelic sequence variation
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