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All papers authored by Elham Azizi

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2024 Joshua Fuller

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, Alexey Abramov

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, Philippe Lemaitre

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, Elham Azizi

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A Deep Learning Framework for Predicting Patient Decannulation on Extracorporeal Membrane Oxygenation Devices: Development and Model Analysis Study

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2023 Cameron Park, Shouvik Mani, Nicolas Beltran-Velez, Katie Maurer, Satyen Gohil, Shuqiang Li, Teddy Huang, David A. Knowles, Catherine J. Wu, Elham Azizi

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DIISCO: A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data

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Yining Liu, Yinuo Jin, Elham Azizi

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, Andrew J. Blumberg

CellStitch: 3D Cellular Anisotropic Image Segmentation via Optimal Transport

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Joshua Fuller, Alexey Abramov, Dana Mullin, James Beck, Philippe Lemaitre, Elham Azizi

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A Deep Learning Framework for Predicting Patient Decannulation on Extracorporeal Membrane Oxygenation Devices: Development and Model Analysis Study (Preprint)

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Yiping Wang, Joy Linyue Fan, Johannes C. Melms

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, Amit Dipak Amin

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, Yohanna Georgis, Irving Barrera, Patricia Ho, Somnath Tagore, Gabriel Abril-Rodríguez, Siyu He, Yinuo Jin, Jana Biermann

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, Lindsay Caprio, Simon Berhe and 10 other authors

Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens

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2022 Siyu He, Yinuo Jin, Achille Nazaret, Lingting Shi, Xueer Chen, Sham Rampersaud, Bahawar S. Dhillon, Izabella Valdez, Lauren E. Friend, Joy Linyue Fan, Cameron Y. Park, Rachel Mintz, Yeh-Hsing Lao, David Carrera, Kaylee W. Fang and 8 other authors

Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment

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Pierre Boyeau, Justin Hong, Adam Gayoso, Michael I. Jordan, Elham Azizi

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, Nir Yosef

Deep generative modeling for quantifying sample-level heterogeneity in single-cell omics

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Jana Biermann

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, Johannes C. Melms

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, Amit Dipak Amin

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, Yiping Wang, Lindsay A. Caprio

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, Alcida Karz, Somnath Tagore

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, Irving Barrera, Miguel A. Ibarra-Arellano, Massimo Andreatta

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, Benjamin T. Fullerton, Kristjan H. Gretarsson, Varun Sahu, Vaibhav S. Mangipudy, Trang T. T. Nguyen and 44 other authors

Dissecting the treatment-naive ecosystem of human melanoma brain metastasis

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2021 Pavan Bachireddy, Elham Azizi

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, Cassandra Burdziak, Vinhkhang N. Nguyen, Katie Maurer

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, Christina S. Ennis

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, Cameron Y. Park, Zi-Ning Choo, Satyen H. Gohil, Shuqiang Li, Neil G. Ruthen

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, Zhongqi Ge, Derin B. Keskin, Kenneth J. Livak

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, Nicoletta Cieri

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and 7 other authors

Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy

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Direna Alonso-Curbelo, Yu-Jui Ho, Cassandra Burdziak, Jesper L. V. Maag, John P. Morris, Rohit Chandwani, Hsuan-An Chen

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, Kaloyan M. Tsanov, Francisco M. Barriga

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, Wei Luan, Nilgun Tasdemir, Geulah Livshits, Elham Azizi

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, Jaeyoung Chun

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, John E. Wilkinson and 5 other authors

A gene–environment-induced epigenetic program initiates tumorigenesis

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Yinuo Jin, Alexandre Toberoff, Elham Azizi

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Transfer learning framework for cell segmentation with incorporation of geometric features

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2019 Aaron D. Viny, Robert L. Bowman, Yu Liu, Vincent-Philippe Lavallée, Shira E. Eisman, Wenbin Xiao, Benjamin H. Durham, Anastasia Navitski, Jane Park, Stephanie Braunstein, Besmira Alija, Abdul Karzai, Isabelle S. Csete, Matthew Witkin, Elham Azizi

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and 6 other authors

Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation

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Saskia Hemmers

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, Michail Schizas, Elham Azizi

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, Stanislav Dikiy

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, Yi Zhong, Yongqiang Feng, Grégoire Altan-Bonnet

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, Alexander Y. Rudensky

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IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus

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Abdoulaye Baniré Diallo, Engelbert Mephu Nguifo, Wajdi Dhifli, Elham Azizi

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, Sandhya Prabhakaran, Wesley Tansey

Selected Papers from the Workshop on Computational Biology: Joint with the International Joint Conference on Artificial Intelligence and the International Conference on Machine Learning, 2018

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2018 Elham Azizi

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, Ambrose J. Carr, George Plitas, Andrew E. Cornish, Catherine Konopacki, Sandhya Prabhakaran, Juozas Nainys, Kenmin Wu, Vaidotas Kiseliovas, Manu Setty, Kristy Choi, Rachel M. Fromme, Phuong Dao, Peter T. McKenney, Ruby C. Wasti and 4 other authors

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment

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2017 Rigzin Dekhang, Cheng Wu, Kristina M. Smith, Teresa M. Lamb, Matthew Peterson, Erin L. Bredeweg, Oneida Ibarra, Jillian M. Emerson, Nirmala Karunarathna, Anna Lyubetskaya, Elham Azizi

ORCID

, Jennifer M. Hurley, Jay C. Dunlap, James E. Galagan, Michael Freitag and 2 other authors

TheNeurosporaTranscription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

2016 S. Prabhakaran, E. Azizi

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, A. Carr, D. Pe'er

Dirichlet process mixture model for correcting technical variation in single-cell gene expression data

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2014 Antonio Lc C. Gomes, Thomas Abeel

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, Matthew Peterson, Elham Azizi

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, Anna Lyubetskaya, Luís Carvalho, James Galagan

Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction

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Elham Azizi

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, Edoardo M. Airoldi, James E. Galagan

Learning modular structures from network data and node variables

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2013 James E. Galagan, Kyle Minch, Matthew Peterson, Anna Lyubetskaya, Elham Azizi

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, Wen-Han Yu, Thomas Abeel

ORCID

, Jeremy Zucker, Linsday Sweet, Chris Mahwinney, Adam D. Kennedy, Brian Weiner, Antonio Gomes, René Allard, Jessica K. Winkler and 31 other authors

The Mycobacterium tuberculosis regulatory network and hypoxia

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