Mattia Pelizzola - Dissemin

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All papers authored by Mattia Pelizzola

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2021 Mattia Furlan

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, Anna Delgado-Tejedor

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, Logan Mulroney

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, Mattia Pelizzola

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, Eva Maria Novoa

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, Tommaso Leonardi

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Computational methods for RNA modification detection from nanopore direct RNA sequencing data

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2020 Mattia Furlan, Stefano de Pretis

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, Mattia Pelizzola

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Dynamics of transcriptional and post-transcriptional regulation

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Adriano Biasini

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, Stefano de Pretis

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, Baroj Abdulkarim, Stefano Pretis, Jennifer Y. Tan

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, Rajika Arora, Harry Wischnewski, Rene Dreos, Mattia Pelizzola

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, Constance Ciaudo

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, Ana Claudia Marques

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Translation is required for miRNA‐dependent decay of endogenous transcripts

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Mattia Furlan, Eugenia Galeota, N. Del Gaudio, Nunzio Del Gaudio, Erik Dassi

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, Michele Caselle, Stefano de Pretis

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, Mattia Pelizzola

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Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling

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2019 Mattia Furlan

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, Eugenia Galeota, Stefano De Pretis

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, Michele Caselle

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, Mattia Pelizzola

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m6A-Dependent RNA Dynamics in T Cell Differentiation

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2016 E. Donato

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, O. Croci, A. Sabò, H. Muller

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, M. J. Morelli, Mattia Pelizzola

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ORCID

Compensatory RNA polymerase 2 loading determines the efficacy and transcriptional selectivity of JQ1 in Myc-driven tumors

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Eugenia Galeota, Mattia Pelizzola

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Ontology-based annotations and semantic relations in large-scale (epi)genomics data.

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Giorgio E. M. Melloni, Stefano de Pretis

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, Laura Riva, Mattia Pelizzola

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, Heiko MĂźller, Arnaud CĂŠol, Arnaud Céol, Luca Zammataro, Jole Costanza, Heiko Müller

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LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer

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Matteo J. Marzi, Francesco Ghini, Benedetta Cerruti, Stefano de Pretis

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, Paola Bonetti

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, Chiara Giacomelli, Marcin G. Gorski, Marcin M. Gorski, Theresia Kress, Mattia Pelizzola

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, Bruno Amati, Francesco Nicassio

Degradation dynamics of microRNAs revealed by a novel pulse-chase approach

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Valerio Bianchi, Arnaud Ceol, Alessandro G. E. Ogier, Stefano de Pretis

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, Eugenia Galeota, Kamal Kishore, Pranami Bora, Ottavio Croci, Stefano Campaner, Bruno Amati, Marco J. Morelli, Mattia Pelizzola

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Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions.

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2015 Liv M. I. Austenaa, Iros Barozzi, Marta Simonatto, Silvia Masella, Giulia Della Chiara, Serena Ghisletti, Alessia Curina, Elzo de Wit, Britta A. M. Bouwman, Stefano de Pretis

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, Viviana Piccolo, Alberto Termanini, Elena Prosperini, Mattia Pelizzola

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, Wouter de Laat

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and 1 other authors

Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination

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Kamal Kishore, Stefano de Pretis

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, Ryan Lister, Marco J. Morelli, Valerio Bianchi, Bruno Amati, Joseph R. Ecker, Mattia Pelizzola

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methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

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Stefano de Pretis

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, Theresia Kress, Marco J. Morelli, Giorgio E. M. Melloni, Laura Riva, Bruno Amati, Mattia Pelizzola

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INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments

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Mark D. Robinson, Mattia Pelizzola

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Computational epigenomics: Challenges and opportunities

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Philip L. de Jager, Zhizhuo Zhang, Xian Zhang, Xiaolan Zhang, Michael J. Ziller, Z. Zhang, Xin Zhou, Yan Zhou, Jianxin Zhao, Jiang Zhu, Yun Zhu, Steven Ziegler, Michael Q. Zhang, M. Q. Zhang, Xin I. N. Zhou and 265 other authors

Integrative analysis of 111 reference human epigenomes

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2014 Stefano de Pretis

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, Mattia Pelizzola

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Computational and experimental methods to decipher the epigenetic code

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Arianna Sabò, Theresia R. Kress, Mattia Pelizzola

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, Stefano de Pretis

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, S. De Pretis, Marcin M. Gorski, Alessandra Tesi, Marco J. Morelli, Pranami Bora, Mirko Doni, Alessandro Verrecchia, Claudia Tonelli

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, Giovanni Fagà, Valerio Bianchi, Alberto Ronchi and 5 other authors

Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis

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Giorgio Em Melloni, Alessandro Ge Ogier, Stefano de Pretis

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, Luca Mazzarella

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, Mattia Pelizzola

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, Pier Giuseppe Pelicci, Laura Riva

DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes

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A. van Soom, Brigitte Bressac de Paillerets, Geneviève Almouzni, Lucia Altucci, Bruno Amati, Neil Ashley, U. Poto Nik, David Baulcombe, Nathalie Beaujean, Christoph Bock

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, Erik Bongcam-Rudloff, Jean Bousquet, Sigurd Braun, Brigitte Bressac-De Paillerets, Marion Bussemakers and 60 other authors

Relationship between genome and epigenome - challenges and requirements for future research

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2013 Timothy J. Looney, Looney Tj, Li Zhang, Chen Ch, Chih-Hsin Chen, Jae Hyun Lee, Lee Jh, Sheila Chari, Frank Fuxiang Mao, Mao Ff, Mattia Pelizzola

ORCID

, Lu Zhang, Ryan Lister, Baker Sw, Samuel W. Baker and 33 other authors

Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells

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