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All papers authored by Thomas Ferrin

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2020 Eric F. Pettersen, Thomas D. Goddard, Conrad C. Huang, Elaine C. Meng, Gregory S. Couch, Tristan I. Croll, John H. Morris

, Thomas E. Ferrin

UCSF ChimeraX : Structure Visualization for Researchers, Educators, and Developers

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2018 Thomas D. Goddard, Alan A. Brilliant, Thomas L. Skillman, Steven Vergenz, James Tyrwhitt-Drake, Elaine C. Meng, Thomas E. Ferrin

Molecular Visualization on the Holodeck

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

2017 Thomas Ferrin

Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changesAbstract

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Thomas D. Goddard, Conrad C. Huang, Elaine C. Meng, Eric F. Pettersen, Gregory S. Couch, John H. Morris, Thomas E. Ferrin

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

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Gemma L. Holliday

, Shoshana D. Brown, Eyal Akiva, David Mischel, Michael A. Hicks, John H. Morris, Conrad C. Huang, Elaine C. Meng, Scott C.-H. Pegg, Thomas E. Ferrin

, Patricia C. Babbitt

Biocuration in the structure–function linkage database: the anatomy of a superfamily

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2015 John H. Morris, Dhameliya Vijay, Steven Federowicz, Alexander R. Pico, Thomas E. Ferrin

CyAnimator: Simple Animations of Cytoscape Networks [v1; ref status: approved 1, http://f1000r.es/5oq]

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John H. Morris

, Dhameliya Vijay, Steven Federowicz, Alexander R. Pico

, Thomas E. Ferrin

CyAnimator: Simple Animations of Cytoscape Networks

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Samuel Hertig, Thomas D. Goddard, Graham T. Johnson, Thomas E. Ferrin

Multidomain Assembler (MDA) Generates Models of Large Multidomain Proteins

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2014 John H. Morris

, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Thomas E. Ferrin

setsApp: Set operations for Cytoscape Nodes and Edges

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2011 John H. Morris, Leonard Apeltsin, Aaron M. Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D. Bader, Thomas E. Ferrin

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

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Zheng Yang, Keren Lasker, Dina Schneidman-Duhovny, Ben Webb, Conrad C. Huang, Eric F. Pettersen, Thomas D. Goddard, Elaine C. Meng, Andrej Sali, Thomas E. Ferrin

UCSF Chimera, MODELLER, and IMP: an Integrated Modeling System

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2010 Sarina Bromberg, Wah Chiu, Thomas E. Ferrin

Workshop on Molecular Animation

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Avner Schlessinger, Pär Matsson, James E. Shima, Ursula Pieper, Sook Wah Yee, Libusha Kelly, Leonard Apeltsin, Robert M. Stroud, Thomas E. Ferrin

, Kathleen M. Giacomini, Andrej Sali

Comparison of human solute carriers

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2009 Holly J. Atkinson, John H. Morris, Thomas E. Ferrin

, Patricia C. Babbitt

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

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2007 Thomas D. Goddard, Thomas E. Ferrin

Visualization Software for Molecular Assemblies

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Thomas D. Goddard, Conrad C. Huang, Thomas E. Ferrin

Visualizing density maps with UCSF Chimera

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2006 Yasuo Yoshikuni, Thomas E. Ferrin

, Jay D. Keasling

Designed divergent evolution of enzyme function

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Yasuo Yoshikuni, Vincent J. J. Martin, Thomas E. Ferrin

, Jay D. Keasling

Engineering Cotton (+)-δ-Cadinene Synthase to an Altered Function: Germacrene D-4-ol Synthase

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2005 Thomas D. Goddard, Conrad C. Huang, Thomas E. Ferrin

Software Extensions to UCSF Chimera for Interactive Visualization of Large Molecular Assemblies

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2002 Doug Stryke, Conrad C. Huang, Michiko Kawamoto, Susan J. Johns, Elaine J. Carlson, Joseph A. Deyoung, Maya K. Leabman, Ira Herskowitz, Kathleen M. Giacomini, Thomas E. Ferrin

SNP analysis and presentation in the Pharmacogenetics of Membrane Transporters Project.

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All papers authored by Thomas Ferrin