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All papers authored by Derek Chiang

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2024 Handan Xiang

ORCID

, Karyn Ann van de Mark

ORCID

ORCID

ORCID

, Marta Wlodarska

ORCID

, Ling Li

ORCID

, Karyn A.-N.-N. Van De Mark, Haleema Qamar

ORCID

, Casey J. Moure

ORCID

, Douglas E. Linn

ORCID

, Josephine Hai

ORCID

, Ying Huo

ORCID

ORCID

ORCID

ORCID

and 15 other authors

Single-cell analysis identifies NOTCH3-mediated interactions between stromal cells that promote microenvironment remodeling and invasion in lung adenocarcinoma

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2020 Latika Singh, Eric S. Muise

ORCID

, Anannya Bhattacharya

ORCID

, Jeff Grein, Sarah Javaid, Peter Stivers, Jun Zhang, Yujie Qu, Barbara Joyce-Shaikh, Andrey Loboda, Chunsheng Zhang, Michael Meehl, Derek Y. Chiang

ORCID

, Sheila H. Ranganath, Michael Rosenzweig and 1 other authors

ILT3 (LILRB4) Promotes the Immunosuppressive Function of Tumor-Educated Human Monocytic Myeloid-Derived Suppressor Cells

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2019 Theresa A. Boyle

ORCID

, Gwendolyn P. Quinn, Matthew B. Schabath

ORCID

, Teresita Muñoz‐Antonia, James J. Saller, Luisa F. Duarte, Laura S. Hair, Jamie K. Teer, Derek Y. Chiang

ORCID

, Rebecca Leary, Connie C. Wong, Alexander Savchenko, Angad P. Singh, LaSalette Charette, Kate Mendell and 6 other authors

A community‐based lung cancer rapid tissue donation protocol provides high‐quality drug‐resistant specimens for proteogenomic analyses

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2017 Derek Y. Chiang

ORCID

, Augusto Villanueva

Progress towards molecular patient stratification of hepatocellular carcinoma: Lost in translation?

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Li Zhang, Kenzie D. MacIsaac, Ting Zhou, Pei-Yu Huang, Chunlin Xin, Jason R. Dobson, Kun Yu, Derek Y. Chiang

ORCID

, Yue Fan, Marc Pelletier, Yan Wang, Savina Jaeger, Viveksagar Krishnamurthy Radhakrishnan, Lellean JeBailey, Peter Skewes-Cox and 14 other authors

Genomic Analysis of Nasopharyngeal Carcinoma Reveals TME-Based Subtypes

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2016 Markus Riester

ORCID

, Angad P. Singh, A. Rose Brannon, Rose Brannon, Kun Yu, Catarina D. Campbell, Katie Campbell, Derek Y. Chiang

ORCID

, Michael P. Morrissey

PureCN: copy number calling and SNV classification using targeted short read sequencing

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Ax Zhu, David Chen, Wei He, Masayuki Kanai, Maurizio Voi, Lt Chen, Bruno Daniele, Junji Furuse, Yk Kang, Rtp Poon, Arndt Vogel, Dy Chiang

ORCID

Integrative biomarker analyses indicate etiological variations in hepatocellular carcinoma

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2015 Hui Gao, Joshua M. Korn, Stéphane Ferretti, John E. Monahan, Youzhen Wang, Mallika Singh

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, Chao Zhang, Christian Schnell, Guizhi Yang, Yun Zhang, O. Alejandro Balbin, O. Alejandro Balbin, Stéphanie Barbe, Hongbo Cai, Fergal Casey and 50 other authors

High-throughput screening using patient-derived tumor xenografts to predict clinical trial drug response

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Hyo-Eun C. Bhang

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, David A. Ruddy, Viveksagar Krishnamurthy Radhakrishna, Viveksagar Krishnamurthy Radhakrishna, Justina X. Caushi, Rui Zhao, Matthew M. Hims, Angad P. Singh, Iris Kao, Daniel Rakiec, Pamela Shaw, Marissa Balak, Alina Raza, Elizabeth Ackley

ORCID

, Nicholas Keen and 9 other authors

Studying clonal dynamics in response to cancer therapy using high-complexity barcoding

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Adam B. Sendor, Kathryn E. Hacker, Autumn J. McRee, Shufen Chen, Oishee Sen, Derek Y. Chiang

ORCID

, Anna Snavely, Arlin B. Rogers, Stephanie A. Montgomery, Armando L. Corona, W. Kimryn Rathmell, W. Kimryn Rathmell

Von Hippel-Lindau status influences phenotype of liver cancers arising from PTEN loss

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2014 Alexandra R. Grassian, Raymond Pagliarini, Derek Y. Chiang

ORCID

Mutations of isocitrate dehydrogenase 1 and 2 in intrahepatic cholangiocarcinoma:

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William R. Jeck, Joel Parker, Craig C. Carson, Janiel M. Shields, Maria J. Sambade, Eldon C. Peters, Christin E. Burd, Nancy E. Thomas, Derek Y. Chiang

ORCID

, Wenjin Liu, David A. Eberhard, David Ollila, Juneko Grilley-Olson, Stergios Moschos, D. Neil Hayes and 1 other authors

Targeted next generation sequencing identifies clinically actionable mutations in patients with melanoma

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2013 Sean P. Cleary, William R. Jeck

ORCID

, Xiaobei Zhao, Kui Chen, Kuichen, Sara R. Selitsky, Gleb L. Savich, Ting-Xu Tan, Michael C. Wu, Gad Getz, Michael S. Lawrence, Joel S. Parker, Jinyu Li, Scott Powers, Hyeja Kim and 5 other authors

Identification of Driver Genes in Hepatocellular Carcinoma by Exome Sequencing

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2012 Aziz M. Mezlini, Eric Jm M. Smith, Marc Fiume, Orion Buske, Gleb L. Savich, Sohrab Shah, Sam Aparicio, Sam Aparicion, Derek Y. Chiang

ORCID

, Anna Goldenberg, Michael Brudno

iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data

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Yin Hu, Yan Huang, Ying Du, Christian F. Orellana, Darshan Singh, Amy R. Johnson, Anaïs Monroy, Pei-Fen Kuan, Scott M. Hammond, Liza Makowski

ORCID

, Scott H. Randell, Derek Y. Chiang

ORCID

, D. Neil Hayes, D. Neil Hayes, Corbin Jones and 3 other authors

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq

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Pu Wang, Qiongzhu Dong, Chong Zhang, Pei-Fen Kuan, Yufeng Liu, William R. Jeck, Jesper B. Andersen, Wenqing Jiang, Gleb L. Savich, Ting-Xu Tan, J. Todd Auman, J. Todd Auman, Janelle M. Hoskins, Anne D. Misher, Catherine D. Moser and 12 other authors

Mutations in Isocitrate Dehydrogenase 1 and 2 Occur Frequently in Intrahepatic Cholangiocarcinomas and Share Hypermethylation Targets with Glioblastomas

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Pei Fen Kuan, Derek Y. Chiang

ORCID

Integrating Prior Knowledge in Multiple Testing under Dependence with Applications to Detecting Differential DNA Methylation

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Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang

ORCID

, Yufeng Liu, Jan F. Prins, Jinze Liu

A Robust Method for Transcript Quantification with RNA-Seq Data

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2011 Darshan Singh, Christian F. Orellana, Yin Hu, Corbin D. Jones, Yufeng Liu, Derek Y. Chiang

ORCID

, Jinze Liu, Jan F. Prins

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

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Monte Meier Winslow, Talya Lucia Dayton

ORCID

, Roel G. W. Verhaak, Caroline Kim-Kiselak, Eric L. Snyder, David M. Feldser, Diana D. Hubbard, Michel J. DuPage, Charles A. Whittaker, Sebastian Hoersch, Stephanie M. Yoon, Denise G. Crowley, Roderick T. Bronson, Derek Y. Chiang

ORCID

, Matthew Meyerson and 1 other authors

Suppression of Lung Adenocarcinoma Progression by Nkx2-1

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