All papers authored by Benjamin J. Ainscough
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2022
Kilannin Krysiak 
,
Arpad M. Danos ,
Susanna Kiwala,
Joshua F. McMichael ,
Adam C. Coffman ,
Erica K. Barnell,
Lana Sheta,
Jason Saliba,
Cameron J. Grisdale ,
Lynzey Kujan,
Shahil Pema,
Jake Lever,
Nicholas C. Spies,
Andreea Chiorean,
Damian T. Rieke
and 37 other authors
,
Arpad M. Danos ,
Susanna Kiwala,
Joshua F. McMichael ,
Adam C. Coffman ,
Erica K. Barnell,
Lana Sheta,
Jason Saliba,
Cameron J. Grisdale ,
Lynzey Kujan,
Shahil Pema,
Jake Lever,
Nicholas C. Spies,
Andreea Chiorean,
Damian T. Rieke
and 37 other authors
A community approach to the cancer-variant-interpretation bottleneck
Download from www.nature.com
2018
Erica K. Barnell ,
Peter Ronning ,
Katie M. Campbell ,
Kilannin Krysiak ,
Benjamin J. Ainscough ,
Cody Ramirez ,
Nick Spies,
Jason Kunisaki,
Jasreet Hundal,
Zachary L. Skidmore ,
Felicia Gomez ,
Lee Trani,
Matthew Matlock ,
Alex H. Wagner ,
S. Joshua Swamidass
and 3 other authors
,
Peter Ronning ,
Katie M. Campbell ,
Kilannin Krysiak ,
Benjamin J. Ainscough ,
Cody Ramirez ,
Nick Spies,
Jason Kunisaki,
Jasreet Hundal,
Zachary L. Skidmore ,
Felicia Gomez ,
Lee Trani,
Matthew Matlock ,
Alex H. Wagner ,
S. Joshua Swamidass
and 3 other authors
Standard operating procedure for somatic variant refinement of tumor sequencing data
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2017
Malachi Griffith,
Nicholas C. Spies,
Kilannin Krysiak,
Joshua F. McMichael,
Adam C. Coffman,
Arpad M. Danos,
Benjamin J. Ainscough ,
Cody A. Ramirez,
Damian T. Rieke,
Lynzey Kujan,
Erica K. Barnell,
Alex H. Wagner,
Zachary L. Skidmore,
Amber Wollam,
Connor J. Liu
and 30 other authors
Download from www.nature.com
,
Cody A. Ramirez,
Damian T. Rieke,
Lynzey Kujan,
Erica K. Barnell,
Alex H. Wagner,
Zachary L. Skidmore,
Amber Wollam,
Connor J. Liu
and 30 other authors
Download from www.nature.com
2016
Benjamin J. Ainscough ,
Malachi Griffith ,
Adam C. Coffman,
Alex H. Wagner ,
Jason Kunisaki,
Mayank Nk Choudhary ,
Joshua F. McMichael,
Robert S. Fulton,
Richard K. Wilson,
Obi L. Griffith,
Elaine R. Mardis
,
Malachi Griffith ,
Adam C. Coffman,
Alex H. Wagner ,
Jason Kunisaki,
Mayank Nk Choudhary ,
Joshua F. McMichael,
Robert S. Fulton,
Richard K. Wilson,
Obi L. Griffith,
Elaine R. Mardis
DoCM: a database of curated mutations in cancer
Download from www.nature.com
Jiwen Xin,
Adam Mark,
Cyrus Afrasiabi,
Ginger Tsueng,
Moritz Juchler,
Nikhil Gopal,
Gregory S. Stupp,
Timothy E. Putman,
Benjamin J. Ainscough ,
Obi L. Griffith,
Ali Torkamani,
Patricia L. Whetzel,
Christopher J. Mungall,
Sean D. Mooney,
Andrew I. Su
and 1 other authors
,
Obi L. Griffith,
Ali Torkamani,
Patricia L. Whetzel,
Christopher J. Mungall,
Sean D. Mooney,
Andrew I. Su
and 1 other authors
High-performance web services for querying gene and variant annotation
Download from link.springer.com
Malachi Griffith,
Obi L. Griffith,
Kilannin Krysiak,
Zachary L. Skidmore,
Matthew J. Christopher,
Jeffery M. Klco,
Avinash Ramu,
Tamara L. Lamprecht,
Alex H. Wagner,
Katie M. Campbell,
Robert Lesurf,
Jasreet Hundal,
Jin Zhang,
Nicholas C. Spies,
Benjamin J. Ainscough
and 22 other authors
Download from doi.org
and 22 other authors
Download from doi.org
2015
Alex H. Wagner,
Adam C. Coffman,
Benjamin J. Ainscough ,
Nicholas C. Spies,
Zachary L. Skidmore,
Katie M. Campbell,
Kilannin Krysiak,
Deng Pan,
Joshua F. McMichael,
James M. Eldred,
Jason R. Walker,
Richard K. Wilson,
Elaine R. Mardis,
Malachi Griffith ,
Obi L. Griffith
,
Nicholas C. Spies,
Zachary L. Skidmore,
Katie M. Campbell,
Kilannin Krysiak,
Deng Pan,
Joshua F. McMichael,
James M. Eldred,
Jason R. Walker,
Richard K. Wilson,
Elaine R. Mardis,
Malachi Griffith ,
Obi L. Griffith
DGIdb 2.0: mining clinically relevant drug-gene interactions
Download from doi.org
Malachi Griffith,
Jason R. Walker,
Nicholas C. Spies,
Benjamin J. Ainscough ,
Obi L. Griffith ,
Francis Ouellette
,
Obi L. Griffith ,
Francis Ouellette
Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud
Download from doi.org
Malachi Griffith,
Obi L. Griffith ,
Scott M. Smith,
Avinash Ramu,
Matthew B. Callaway,
Anthony M. Brummett,
Michael J. Kiwala,
Adam C. Coffman,
Allison A. Regier,
Ben J. Oberkfell,
Gabriel E. Sanderson,
Thomas P. Mooney,
Nathaniel G. Nutter,
Edward A. Belter,
Feiyu Du
and 50 other authors
,
Scott M. Smith,
Avinash Ramu,
Matthew B. Callaway,
Anthony M. Brummett,
Michael J. Kiwala,
Adam C. Coffman,
Allison A. Regier,
Ben J. Oberkfell,
Gabriel E. Sanderson,
Thomas P. Mooney,
Nathaniel G. Nutter,
Edward A. Belter,
Feiyu Du
and 50 other authors
Genome Modeling System: A Knowledge Management Platform for Genomics
Download from doi.org
2014
Dejan Juric,
Pau Castel ,
Malachi Griffith,
Obi L. Griffith,
Helen H. Won,
Haley Ellis,
Saya H. Ebbesen,
Benjamin J. Ainscough ,
Avinash Ramu,
Gopa Iyer,
Ronak H. Shah ,
Tiffany Huynh,
Mari Mino-Kenudson,
Dennis Sgroi,
Steven Isakoff
and 13 other authors
,
Malachi Griffith,
Obi L. Griffith,
Helen H. Won,
Haley Ellis,
Saya H. Ebbesen,
Benjamin J. Ainscough ,
Avinash Ramu,
Gopa Iyer,
Ronak H. Shah ,
Tiffany Huynh,
Mari Mino-Kenudson,
Dennis Sgroi,
Steven Isakoff
and 13 other authors
Convergent loss of PTEN leads to clinical resistance to a PI3Kα inhibitor
Download from www.nature.com
John S. K. Kauwe,
Matthew H. Bailey,
Perry G. Ridge,
Rachel Perry,
Mark E. Wadsworth,
Kaitlyn L. Hoyt,
Lyndsay A. Staley,
Celeste M. Karch,
Oscar Harari,
Carlos Cruchaga,
Benjamin J. Ainscough ,
Kelly Bales,
Eve H. Pickering,
Sarah Bertelsen,
Anne M. Fagan
and 5 other authors
Download from dx.doi.org
,
Kelly Bales,
Eve H. Pickering,
Sarah Bertelsen,
Anne M. Fagan
and 5 other authors
Download from dx.doi.org
Benjamin M. Good,
Benjamin J. Ainscough ,
Josh F. McMichael,
Andrew I. Su,
Obi L. Griffith
,
Josh F. McMichael,
Andrew I. Su,
Obi L. Griffith
Organizing knowledge to enable personalization of medicine in cancer
Download from link.springer.com
Oscar Harari,
Carlos Cruchaga,
John S. K. Kauwe,
Benjamin J. Ainscough ,
Kelly Bales,
Eve H. Pickering,
Sarah Bertelsen,
Anne M. Fagan,
David M. Holtzman,
John C. Morris,
Alison M. Goate
Download from www.ncbi.nlm.nih.gov
,
Kelly Bales,
Eve H. Pickering,
Sarah Bertelsen,
Anne M. Fagan,
David M. Holtzman,
John C. Morris,
Alison M. Goate
Download from www.ncbi.nlm.nih.gov
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