Joseph Rudzinski - Dissemin

All papers authored by Joseph Rudzinski

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2023 Carola S. Krevert, Daniel Chavez, Sayantan Chatterjee, Lukas S. Stelzl

, Sabine Pütz, Steven J. Roeters

, Joseph F. Rudzinski

, Nicolas L. Fawzi

, Martin Girard

, Sapun H. Parekh

, Johannes Hunger

Liquid–Liquid Phase Separation of the Intrinsically Disordered Domain of the Fused in Sarcoma Protein Results in Substantial Slowing of Hydration Dynamics

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2021 Joseph F. Rudzinski

, Sebastian Kloth, Svenja Wörner, Tamisra Pal, Kurt Kremer

, Tristan Bereau

, Michael Vogel

Dynamical properties across different coarse-grained models for ionic liquids

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2020 Joseph F. Rudzinski

, Tristan Bereau

Coarse-grained conformational surface hopping: Methodology and transferability

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Yasemin Bozkurt Varolgüneş

, Tristan Bereau

, Joseph F. Rudzinski

Interpretable embeddings from molecular simulations using Gaussian mixture variational autoencoders

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Yani Zhao

, Robin Cortes-Huerto

, Kurt Kremer

, Joseph F. Rudzinski

Investigating the Conformational Ensembles of Intrinsically Disordered Proteins with a Simple Physics-Based Model

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2019 Svenja J. Wörner, Tristan Bereau

, Kurt Kremer

, Joseph F. Rudzinski

Direct route to reproducing pair distribution functions with coarse-grained models via transformed atomistic cross correlations

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This paper is made freely available by the publisher.

Joseph F. Rudzinski

Recent Progress towards Chemically-Specific Coarse-Grained Simulation Models with Consistent Dynamical Properties

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Joseph F. Rudzinski

, Marc Radu, Tristan Bereau

Automated detection of many-particle solvation states for accurate characterizations of diffusion kinetics

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2018 Tristan Bereau, Joseph F. Rudzinski

Accurate Structure-Based Coarse Graining Leads to Consistent Barrier-Crossing Dynamics

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Joseph F. Rudzinski

, Tristan Bereau

Structural-kinetic-thermodynamic relationships identified from physics-based molecular simulation models

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2017 Joseph F. Rudzinski

, Tristan Bereau

The role of conformational entropy in the determination of structural-kinetic relationships for helix-coil transitions

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Nicholas J. H. Dunn, Kathryn M. Lebold, Michael R. DeLyser, Joseph F. Rudzinski

, W. G. Noid

BOCS: Bottom-up Open-source Coarse-graining Software

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Joseph F. Rudzinski

, Keran Lu, Scott T. Milner, Janna K. Maranas, William G. Noid

Extended Ensemble Approach to Transferable Potentials for Low-Resolution Coarse-Grained Models of Ionomers

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2016 Joseph F. Rudzinski

, Kurt Kremer, Tristan Bereau

Communication: Consistent interpretation of molecular simulation kinetics using Markov state models biased with external information

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Joseph F. Rudzinski

, Tristan Bereau

Concurrent parametrization against static and kinetic information leads to more robust coarse-grained force fields

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2015 J. F. Rudzinski

, W. G. Noid

A generalized-Yvon-Born-Green method for coarse-grained modeling

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Joseph F. Rudzinski

, William G. Noid

Bottom-Up Coarse-Graining of Peptide Ensembles and Helix–Coil Transitions

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Joseph Rudzinski

Hierarchical Coarse-Graining Via a Generalized Yvon-Born Green Framework: Many-Body Correlations, Mappings, and Structural Accuracy

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2014 Joseph F. Rudzinski

, William G. Noid

Investigation of Coarse-Grained Mappings via an Iterative Generalized Yvon–Born–Green Method

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Keran Lu, Joseph F. Rudzinski

, W. G. Noid, Scott T. Milner, Janna K. Maranas

Scaling behavior and local structure of ion aggregates in single-ion conductors

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All papers authored by Joseph Rudzinski