Papers authored by David Ochoa
Refreshing results…
2023
Matthew Thakur 
,
Annalisa Buniello ,
Catherine Brooksbank,
Kim T. Gurwitz,
Matthew Hall,
Matthew Hartley,
David G. Hulcoop,
Andrew R. Leach,
Diana Marques ,
Maria Martin,
Aziz Mithani,
Ellen M. McDonagh ,
Euphemia Mutasa-Gottgens,
David Ochoa ,
Yasset Perez-Riverol
and 6 other authors
,
Annalisa Buniello ,
Catherine Brooksbank,
Kim T. Gurwitz,
Matthew Hall,
Matthew Hartley,
David G. Hulcoop,
Andrew R. Leach,
Diana Marques ,
Maria Martin,
Aziz Mithani,
Ellen M. McDonagh ,
Euphemia Mutasa-Gottgens,
David Ochoa ,
Yasset Perez-Riverol
and 6 other authors
EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023
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Clare E. West ,
Mohd Karim ,
Maria J. Falaguera ,
Leo Speidel,
Charlotte J. Green,
Lisa Logie,
Jeremy Schwartzentruber ,
David Ochoa ,
Janet M. Lord ,
Michael A. J. Ferguson ,
Chas Bountra,
Graeme F. Wilkinson ,
Beverley Vaughan,
Andrew R. Leach ,
Ian Dunham
and 1 other authors
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,
Mohd Karim ,
Maria J. Falaguera ,
Leo Speidel,
Charlotte J. Green,
Lisa Logie,
Jeremy Schwartzentruber ,
David Ochoa ,
Janet M. Lord ,
Michael A. J. Ferguson ,
Chas Bountra,
Graeme F. Wilkinson ,
Beverley Vaughan,
Andrew R. Leach ,
Ian Dunham
and 1 other authors
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Sebastian Lobentanzer ,
Patrick Aloy,
Jan Baumbach ,
Balazs Bohar,
Vincent J. Carey,
Pornpimol Charoentong,
Katharina Danhauser,
Tunca Doğan ,
Johann Dreo,
Ian Dunham,
Elias Farr ,
Adrià Fernandez-Torras,
Benjamin M. Gyori ,
Michael Hartung ,
Charles Tapley Hoyt
and 17 other authors
,
Patrick Aloy,
Jan Baumbach ,
Balazs Bohar,
Vincent J. Carey,
Pornpimol Charoentong,
Katharina Danhauser,
Tunca Doğan ,
Johann Dreo,
Ian Dunham,
Elias Farr ,
Adrià Fernandez-Torras,
Benjamin M. Gyori ,
Michael Hartung ,
Charles Tapley Hoyt
and 17 other authors
Democratizing knowledge representation with BioCypher
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2022
David Ochoa ,
Andrew Hercules,
Miguel Carmona,
Daniel Suveges,
Jarrod Baker,
Cinzia Malangone,
Irene Lopez,
Alfredo Miranda,
Carlos Cruz-Castillo,
Luca Fumis,
Manuel Bernal-Llinares ,
Kirill Tsukanov ,
Helena Cornu,
Konstantinos Tsirigos,
Olesya Razuvayevskaya
and 19 other authors
,
Andrew Hercules,
Miguel Carmona,
Daniel Suveges,
Jarrod Baker,
Cinzia Malangone,
Irene Lopez,
Alfredo Miranda,
Carlos Cruz-Castillo,
Luca Fumis,
Manuel Bernal-Llinares ,
Kirill Tsukanov ,
Helena Cornu,
Konstantinos Tsirigos,
Olesya Razuvayevskaya
and 19 other authors
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
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2021
Cristina Viéitez ,
Bede P. Busby ,
David Ochoa ,
André Mateus ,
Danish Memon ,
Marco Galardini,
Umut Yildiz ,
Matteo Trovato ,
Areeb Jawed ,
Alexander G. Geiger ,
Michaela Oborská-Oplová ,
Clement M. Potel,
Sibylle C. Vonesch ,
Chelsea Szu Tu,
Chelsea Szu Tu
and 8 other authors
,
Bede P. Busby ,
David Ochoa ,
André Mateus ,
Danish Memon ,
Marco Galardini,
Umut Yildiz ,
Matteo Trovato ,
Areeb Jawed ,
Alexander G. Geiger ,
Michaela Oborská-Oplová ,
Clement M. Potel,
Sibylle C. Vonesch ,
Chelsea Szu Tu,
Chelsea Szu Tu
and 8 other authors
High-throughput functional characterization of protein phosphorylation sites in yeast
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Mohd Anisul ,
Mohd A. Karim,
Karim Ma,
Jarrod Shilts,
Jeremy Schwartzentruber,
James Hayhurst,
Elmutaz Shaikho Elhaj Mohammed,
Annalisa Buniello,
Elmutaz Shaikho Elhaj Mohammed,
Michael V. Holmes,
Mohammed Ese,
Jie Zheng ,
Holmes Mv,
David Ochoa ,
Miguel Carmona
and 9 other authors
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,
Mohd A. Karim,
Karim Ma,
Jarrod Shilts,
Jeremy Schwartzentruber,
James Hayhurst,
Elmutaz Shaikho Elhaj Mohammed,
Annalisa Buniello,
Elmutaz Shaikho Elhaj Mohammed,
Michael V. Holmes,
Mohammed Ese,
Jie Zheng ,
Holmes Mv,
David Ochoa ,
Miguel Carmona
and 9 other authors
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Melanie Schneider ,
Chris J. Radoux,
Andrew Hercules,
David Ochoa ,
Ian Dunham ,
Lykourgos-Panagiotis Zalmas ,
Gerhard Hessler,
Sven Ruf,
Veerabahu Shanmugasundaram,
Michael M. Hann,
Pam J. Thomas,
Markus A. Queisser ,
Andrew B. Benowitz,
Kris Brown,
Andrew R. Leach
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,
Chris J. Radoux,
Andrew Hercules,
David Ochoa ,
Ian Dunham ,
Lykourgos-Panagiotis Zalmas ,
Gerhard Hessler,
Sven Ruf,
Veerabahu Shanmugasundaram,
Michael M. Hann,
Pam J. Thomas,
Markus A. Queisser ,
Andrew B. Benowitz,
Kris Brown,
Andrew R. Leach
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2020
David Ochoa ,
Andrew Hercules,
Miguel Carmona,
Daniel Suveges,
Asier Gonzalez-Uriarte,
Cinzia Malangone,
Alfredo Miranda,
Luca Fumis,
Denise Carvalho-Silva ,
Michaela Spitzer,
Jarrod Baker,
Javier Ferrer,
Arwa Raies,
Olesya Razuvayevskaya,
Adam Faulconbridge
and 17 other authors
,
Andrew Hercules,
Miguel Carmona,
Daniel Suveges,
Asier Gonzalez-Uriarte,
Cinzia Malangone,
Alfredo Miranda,
Luca Fumis,
Denise Carvalho-Silva ,
Michaela Spitzer,
Jarrod Baker,
Javier Ferrer,
Arwa Raies,
Olesya Razuvayevskaya,
Adam Faulconbridge
and 17 other authors
Open Targets Platform: supporting systematic drug–target identification and prioritisation
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Maya Ghoussaini,
Edward Mountjoy,
Miguel Carmona,
Gareth Peat,
Ellen M. Schmidt,
Andrew Hercules,
Luca Fumis,
Alfredo Miranda,
Denise Carvalho-Silva ,
Annalisa Buniello ,
Tony Burdett ,
James Hayhurst,
Jarrod Baker,
Javier Ferrer,
Asier Gonzalez-Uriarte
and 20 other authors
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,
Annalisa Buniello ,
Tony Burdett ,
James Hayhurst,
Jarrod Baker,
Javier Ferrer,
Asier Gonzalez-Uriarte
and 20 other authors
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2019
David Ochoa ,
Andrew F. Jarnuczak,
Maja Gehre ,
Cristina Viéitez ,
Margaret Soucheray,
André Mateus ,
Askar A. Kleefeldt ,
Anthony Hill ,
Luz Garcia-Alonso,
Frank Stein ,
Nevan J. Krogan ,
Mikhail M. Savitski,
Danielle L. Swaney,
Juan Antonio Vizcaíno ,
Kyung-Min Noh
and 1 other authors
,
Andrew F. Jarnuczak,
Maja Gehre ,
Cristina Viéitez ,
Margaret Soucheray,
André Mateus ,
Askar A. Kleefeldt ,
Anthony Hill ,
Luz Garcia-Alonso,
Frank Stein ,
Nevan J. Krogan ,
Mikhail M. Savitski,
Danielle L. Swaney,
Juan Antonio Vizcaíno ,
Kyung-Min Noh
and 1 other authors
The functional landscape of the human phosphoproteome
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C. Viéitez,
Sibylle Vonesch ,
Busby Bp,
D. Ochoa ,
A. Mateus,
M. Galardini,
A. Jawed,
D. Memon ,
Potel Cm,
Vonesch Sc,
Tu Cs,
C. Szu Tu,
M. Shahraz,
F. Stein ,
Steinmetz Lm
and 2 other authors
,
Busby Bp,
D. Ochoa ,
A. Mateus,
M. Galardini,
A. Jawed,
D. Memon ,
Potel Cm,
Vonesch Sc,
Tu Cs,
C. Szu Tu,
M. Shahraz,
F. Stein ,
Steinmetz Lm
and 2 other authors
Towards a systematic map of the functional role of protein phosphorylation
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J. Khadake,
K. van Roey,
N. del Toro,
B. Meldal,
IMEx Consortium contributing Authors,
S. Panni,
D. Thorneycroft,
S. Abbani,
L. Salwinski,
M. Pellegrini,
M. Iannuccelli,
L. Licata,
G. Cesareni,
M. Duesbury,
B. Roechert
and 28 other authors
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J. Khadake,
K. van Roey,
N. del Toro,
B. Meldal,
IMEx Consortium Curators,
S. Panni,
D. Thorneycroft,
S. Abbani,
L. Salwinski,
M. Duesbury,
M. Pellegrini,
M. Iannuccelli,
L. Licata,
M. Koch ,
G. Cesareni
and 30 other authors
,
G. Cesareni
and 30 other authors
Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set.
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2018
Marta J. Strumillo ,
Michaela Oplova ,
Cristina Vieitez ,
David Ochoa ,
Mohammed Shahraz,
Bede P. Busby ,
Richelle Sopko,
Romain A. Studer,
Norbert Perrimon ,
Vikram G. Panse ,
Pedro Beltrao
,
Michaela Oplova ,
Cristina Vieitez ,
David Ochoa ,
Mohammed Shahraz,
Bede P. Busby ,
Richelle Sopko,
Romain A. Studer,
Norbert Perrimon ,
Vikram G. Panse ,
Pedro Beltrao
Conserved phosphorylation hotspots in eukaryotic protein domain families
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IMEx Consortium Curators,
N. del Toro ,
M. Duesbury,
M. Koch ,
L. Perfetto,
A. Shrivastava,
D. Ochoa ,
O. Wagih ,
J. Piñero,
M. Kotlyar,
C. Pastrello,
P. Beltrao,
Furlong Li,
I. Jurisica,
P. Chiara
and 3 other authors
,
M. Duesbury,
M. Koch ,
L. Perfetto,
A. Shrivastava,
D. Ochoa ,
O. Wagih ,
J. Piñero,
M. Kotlyar,
C. Pastrello,
P. Beltrao,
Furlong Li,
I. Jurisica,
P. Chiara
and 3 other authors
Capturing variation impact on molecular interactions: the IMEx Consortium mutations data set
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2017
Claudia Hernandez-Armenta,
David Ochoa ,
Emanuel Gonçalves,
Julio Saez-Rodriguez,
Pedro Beltrao
,
Emanuel Gonçalves,
Julio Saez-Rodriguez,
Pedro Beltrao
Benchmarking substrate-based kinase activity inference using phosphoproteomic data
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