All papers authored by Denise Kühnert
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2022
Franziska Hufsky 
,
Ana Abecasis ,
Patricia Agudelo-Romero ,
Magda Bletsa ,
Katherine Brown ,
Claudia Claus ,
Stefanie Deinhardt-Emmer ,
Li Deng ,
Caroline C. Friedel ,
María Inés Gismondi ,
Evangelia Georgia Kostaki ,
Denise Kühnert ,
Urmila Kulkarni-Kale ,
Karin J. Metzner ,
Irmtraud M. Meyer
and 13 other authors
,
Ana Abecasis ,
Patricia Agudelo-Romero ,
Magda Bletsa ,
Katherine Brown ,
Claudia Claus ,
Stefanie Deinhardt-Emmer ,
Li Deng ,
Caroline C. Friedel ,
María Inés Gismondi ,
Evangelia Georgia Kostaki ,
Denise Kühnert ,
Urmila Kulkarni-Kale ,
Karin J. Metzner ,
Irmtraud M. Meyer
and 13 other authors
Women in the European Virus Bioinformatics Center
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Arthur Kocher ,
Luka Papac ,
Rodrigo Barquera ,
Felix M. Key ,
Maria A. Spyrou,
Ron Hübler ,
Adam B. Rohrlach ,
Franziska Aron ,
Raphaela Stahl ,
Antje Wissgott,
Florian van Bömmel ,
Maria Pfefferkorn,
Alissa Mittnik ,
Vanessa Villalba-Mouco ,
Gunnar U. Neumann
and 155 other authors
,
Luka Papac ,
Rodrigo Barquera ,
Felix M. Key ,
Maria A. Spyrou,
Ron Hübler ,
Adam B. Rohrlach ,
Franziska Aron ,
Raphaela Stahl ,
Antje Wissgott,
Florian van Bömmel ,
Maria Pfefferkorn,
Alissa Mittnik ,
Vanessa Villalba-Mouco ,
Gunnar U. Neumann
and 155 other authors
Ten millennia of hepatitis B virus evolution
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Mathilde Boumasmoud,
Vanina Dengler Haunreiter,
Tiziano A. Schweizer,
Lilly Meyer,
Bhavya Chakrakodi,
Peter W. Schreiber,
Kati Seidl,
Denise Kühnert ,
Roger D. Kouyos,
Annelies S. Zinkernagel
Download from journals.asm.org
,
Roger D. Kouyos,
Annelies S. Zinkernagel
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2020
Franziska Hufsky,
Kevin Lamkiewicz,
Alexandre Almeida,
Abdel Aouacheria,
Cecilia Arighi,
Alex Bateman,
Jan Baumbach,
Niko Beerenwinkel,
Christian Brandt ,
Marco Cacciabue,
Sara Chuguransky ,
Oliver Drechsel,
Robert D. Finn,
Adrian Fritz,
Stephan Fuchs
and 40 other authors
Download from academic.oup.com
,
Marco Cacciabue,
Sara Chuguransky ,
Oliver Drechsel,
Robert D. Finn,
Adrian Fritz,
Stephan Fuchs
and 40 other authors
Download from academic.oup.com
Eleanor M. L. Scerri ,
Denise Kühnert ,
James Blinkhorn,
Huw S. Groucutt,
Patrick Roberts ,
Kathleen Nicoll,
Andrea Zerboni,
Emuobosa Akpo Orijemie,
Huw Barton,
Ian Candy,
Steven T. Goldstein,
John Hawks,
Khady Niang,
Didier N’Dah,
Michael D. Petraglia
and 1 other authors
,
Denise Kühnert ,
James Blinkhorn,
Huw S. Groucutt,
Patrick Roberts ,
Kathleen Nicoll,
Andrea Zerboni,
Emuobosa Akpo Orijemie,
Huw Barton,
Ian Candy,
Steven T. Goldstein,
John Hawks,
Khady Niang,
Didier N’Dah,
Michael D. Petraglia
and 1 other authors
Field-based sciences must transform in response to COVID-19
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Susanna Sabin ,
Alexander Herbig,
Åshild J. Vågene ,
Torbjörn Ahlström,
Gracijela Bozovic,
Caroline Arcini,
Denise Kühnert ,
Kirsten I. Bos
Download from link.springer.com
,
Alexander Herbig,
Åshild J. Vågene ,
Torbjörn Ahlström,
Gracijela Bozovic,
Caroline Arcini,
Denise Kühnert ,
Kirsten I. Bos
Download from link.springer.com
Rodrigo Barquera,
Thiseas C. Lamnidis ,
Aditya Kumar Lankapalli,
Arthur Kocher,
Diana I. Hernández-Zaragoza,
Elizabeth A. Nelson ,
Adriana C. Zamora-Herrera,
Patxi Ramallo,
Natalia Bernal-Felipe,
Alexander Immel,
Kirsten Bos,
Víctor Acuña-Alonzo,
Chiara Barbieri,
Patrick Roberts,
Alexander Herbig
and 3 other authors
,
Aditya Kumar Lankapalli,
Arthur Kocher,
Diana I. Hernández-Zaragoza,
Elizabeth A. Nelson ,
Adriana C. Zamora-Herrera,
Patxi Ramallo,
Natalia Bernal-Felipe,
Alexander Immel,
Kirsten Bos,
Víctor Acuña-Alonzo,
Chiara Barbieri,
Patrick Roberts,
Alexander Herbig
and 3 other authors
Origin and Health Status of First-Generation Africans from Early Colonial Mexico
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Felix M. Key ,
Cosimo Posth ,
Luis R. Esquivel-Gomez,
Ron Hübler,
Maria A. Spyrou ,
Gunnar U. Neumann ,
Anja Furtwängler,
Susanna Sabin ,
Marta Burri,
Antje Wissgott,
Aditya Kumar Lankapalli,
Åshild J. Vågene ,
Matthias Meyer,
Sarah Nagel,
Rezeda Tukhbatova
and 30 other authors
,
Cosimo Posth ,
Luis R. Esquivel-Gomez,
Ron Hübler,
Maria A. Spyrou ,
Gunnar U. Neumann ,
Anja Furtwängler,
Susanna Sabin ,
Marta Burri,
Antje Wissgott,
Aditya Kumar Lankapalli,
Åshild J. Vågene ,
Matthias Meyer,
Sarah Nagel,
Rezeda Tukhbatova
and 30 other authors
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process
Download from www.nature.com
2019
Kirsten I. Bos,
Denise Kühnert ,
Alexander Herbig,
Luis Roger Esquivel-Gomez,
Aida Andrades Valtueña ,
Rodrigo Barquera,
Karen Giffin,
Aditya Kumar Lankapalli,
Elizabeth A. Nelson ,
Susanna Sabin,
Maria A. Spyrou,
Johannes Krause
,
Alexander Herbig,
Luis Roger Esquivel-Gomez,
Aida Andrades Valtueña ,
Rodrigo Barquera,
Karen Giffin,
Aditya Kumar Lankapalli,
Elizabeth A. Nelson ,
Susanna Sabin,
Maria A. Spyrou,
Johannes Krause
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens
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Remco Bouckaert ,
Timothy G. Vaughan,
Joëlle Barido-Sottani ,
Sebastián Duchêne ,
Mathieu Fourment ,
Alexandra Gavryushkina,
Joseph Heled ,
Graham Jones ,
Denise Kuehnert,
Denise Kühnert ,
Nicola De Maio ,
Michael Matschiner,
Fábio K. Mendes ,
Nicola F. Mueller,
Nicola F. Müller
and 12 other authors
,
Timothy G. Vaughan,
Joëlle Barido-Sottani ,
Sebastián Duchêne ,
Mathieu Fourment ,
Alexandra Gavryushkina,
Joseph Heled ,
Graham Jones ,
Denise Kuehnert,
Denise Kühnert ,
Nicola De Maio ,
Michael Matschiner,
Fábio K. Mendes ,
Nicola F. Mueller,
Nicola F. Müller
and 12 other authors
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
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Kirsten Hanke,
Nuno Rodrigues Faria,
Denise Kühnert ,
Kaveh Pouran Yousef,
Andrea Hauser,
Karolin Meixenberger,
Alexandra Hofmann,
Viviane Bremer,
Barbara Bartmeyer,
Oliver Pybus,
Claudia Kücherer,
Max von Kleist ,
Norbert Bannert
,
Kaveh Pouran Yousef,
Andrea Hauser,
Karolin Meixenberger,
Alexandra Hofmann,
Viviane Bremer,
Barbara Bartmeyer,
Oliver Pybus,
Claudia Kücherer,
Max von Kleist ,
Norbert Bannert
Reconstruction of the Genetic History and the Current Spread of HIV-1 Subtype A in Germany
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Vanina Dengler Haunreiter,
Mathilde Boumasmoud,
Nicola Häffner,
Dennis Wipfli,
Nadja Leimer,
Carole Rachmühl,
Denise Kühnert ,
Yvonne Achermann,
Reinhard Zbinden,
Stefano Benussi,
Clement Vulin,
Annelies S. Zinkernagel
Download from doi.org
,
Yvonne Achermann,
Reinhard Zbinden,
Stefano Benussi,
Clement Vulin,
Annelies S. Zinkernagel
Download from doi.org
2018
Maria A. Spyrou ,
Rezeda I. Tukhbatova,
Chuan-Chao Wang ,
Aida Andrades Valtueña ,
Aditya K. Lankapalli,
Vitaly V. Kondrashin,
Victor A. Tsybin,
Aleksandr Khokhlov,
Denise Kühnert ,
Alexander Herbig ,
Kirsten I. Bos,
Johannes Krause
,
Rezeda I. Tukhbatova,
Chuan-Chao Wang ,
Aida Andrades Valtueña ,
Aditya K. Lankapalli,
Vitaly V. Kondrashin,
Victor A. Tsybin,
Aleksandr Khokhlov,
Denise Kühnert ,
Alexander Herbig ,
Kirsten I. Bos,
Johannes Krause
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague
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Conor J. Meehan ,
Pieter Moris ,
Thomas A. Kohl,
Julija Pecerska ,
Suriya Akter,
Matthias Merker,
Christian Utpatel,
Patrick Beckert,
Florian Gehre,
Pauline Lempens,
Tanja Stadler ,
Michel K. Kaswa,
Denise Kuehnert,
Denise Kuhnert ,
Stefan Niemann
and 1 other authors
Download from doi.org
,
Pieter Moris ,
Thomas A. Kohl,
Julija Pecerska ,
Suriya Akter,
Matthias Merker,
Christian Utpatel,
Patrick Beckert,
Florian Gehre,
Pauline Lempens,
Tanja Stadler ,
Michel K. Kaswa,
Denise Kuehnert,
Denise Kuhnert ,
Stefan Niemann
and 1 other authors
Download from doi.org
Ben Krause-Kyora ,
Julian Susat,
Felix M. Key ,
Denise Kuehnert,
Denise Kühnert ,
Esther Bosse,
Alexander Immel,
Christoph Rinne,
Sabin-Christin Kornell,
Diego Yepes,
Sören Franzenburg,
Henrike O. Heyne,
Thomas Meier,
Sandra Loesch,
Sandra Lösch
and 9 other authors
,
Julian Susat,
Felix M. Key ,
Denise Kuehnert,
Denise Kühnert ,
Esther Bosse,
Alexander Immel,
Christoph Rinne,
Sabin-Christin Kornell,
Diego Yepes,
Sören Franzenburg,
Henrike O. Heyne,
Thomas Meier,
Sandra Loesch,
Sandra Lösch
and 9 other authors
Neolithic and medieval virus genomes reveal complex evolution of hepatitis B
Download from cdn.elifesciences.org
Denise Kuhnert ,
Adi Stern,
Roger Kouyos,
George Shirreff,
Jūlija Pecerska,
Alexandra U. Scherrer,
J. Bonl,
Jürg Böni,
Sabine Yerly,
Thomas Klimkait,
Vincent Aubert,
Huldrych F. Gunthard,
Tanja Stadler ,
Sebastian Bonhoeffer,
Swiss Hiv Cohort Study
and 1 other authors
,
Adi Stern,
Roger Kouyos,
George Shirreff,
Jūlija Pecerska,
Alexandra U. Scherrer,
J. Bonl,
Jürg Böni,
Sabine Yerly,
Thomas Klimkait,
Vincent Aubert,
Huldrych F. Gunthard,
Tanja Stadler ,
Sebastian Bonhoeffer,
Swiss Hiv Cohort Study
and 1 other authors
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics
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