Researcher
Abhinav Nellore
Oregon Health & Science University
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30 papers found
All papers authored by Abhinav Nellore
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Christopher Wilks,
Rone Charles,
Patrick J. Leavey ,
Devlina Ghosh,
Lizhi Jiang,
Clayton P. Santiago,
Bo Pang,
Anand Venkataraman ,
Brian S. Clark ,
Abhinav Nellore ,
Ben Langmead ,
Seth Blackshaw
ASCOT identifies key regulators of neuronal subtype-specific splicing
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Tumor Mutation Burden—From Doubts to Concerns
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Mayur Paralkar,
Mihir P. Paralkar,
Austin Nguyen,
Adam J. Struck,
Kyle Ellrott,
Adam Margolin,
Abhinav Nellore ,
Reid F. Thompson
Population-level distribution and putative immunogenicity of cancer neoepitopes
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Cloud computing for genomic data analysis and collaboration
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Ben Langmead
Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples
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Ran Tao,
Alexis L. Norris ,
Marc Kealhofer ,
Abhinav Nellore ,
Joo Heon Shin,
Dewey Kim,
Yankai Jia,
Thomas M. Hyde,
Joel E. Kleinman,
Richard E. Straub,
Jeffrey T. Leek,
Daniel R. Weinberger
qSVA framework for RNA quality correction in differential expression analysis
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Andrew E. Jaffe,
Jean-Philippe Fortin,
José Alquicira-Hernández ,
Leonardo Collado-Torres ,
Siruo Wang,
Robert A. Phillips Iii,
Robert A. Phillips,
Nishika Karbhari,
Kasper D. Hansen ,
Ben Langmead,
Jeffrey T. Leek
Download from link.springer.com
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Christopher Wilks,
Kasper Daniel Hansen ,
Jeffrey T. Leek,
Ben Langmead
Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce.
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Leonardo Collado-Torres ,
Andrew E. Jaffe,
José Alquicira-Hernández ,
Christopher Wilks,
Jacob Pritt,
James Morton,
Jeffrey T. Leek,
Ben Langmead
Rail-RNA: Scalable analysis of RNA-seq splicing and coverage
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Rachel Ward
Recovery guarantees for exemplar-based clustering
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Andrew L. Kung,
Jennifer A. Wargo,
Jun S. Song,
David E. Fisher,
Zolt Arany,
Hans R. Widlund
Oncogenic BRAF regulates oxidative metabolism via PGC1α and MITF
Download from www.ncbi.nlm.nih.gov
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Konstantin Bobkov,
Elizabeth Howe,
Aleksandr Pankov,
Aaron Diaz,
Jun S. Song
NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data
Download from dx.doi.org
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Jun S. Song
CHANCE: comprehensive software for quality control and validation of ChIP-seq data
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