Christopher Francis

All papers authored by Christopher Francis

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2020 Anna N. Rasmussen, Julian Damashek, Emiley A. Eloe-Fadrosh, Christopher A. Francis

In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay

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Emily L. Cardarelli, John R. Bargar, Christopher A. Francis

Diverse Thaumarchaeota Dominate Subsurface Ammonia-oxidizing Communities in Semi-arid Floodplains in the Western United States

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Linta Reji, Christopher A. Francis

Metagenome-assembled genomes reveal unique metabolic adaptations of a basal marine Thaumarchaeota lineage

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Bradley B. Tolar

, Linta Reji, Jason M. Smith

, Marguerite Blum, J. Timothy Pennington, Francisco P. Chavez, Christopher A. Francis

Time series assessment of Thaumarchaeota ecotypes in Monterey Bay reveals the importance of water column position in predicting distribution–environment relationships

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2019 Linta Reji, Bradley B. Tolar, Jason M. Smith, Francisco P. Chavez, Christopher A. Francis

Depth distributions of nitrite reductase ( nirK ) gene variants reveal spatial dynamics of thaumarchaeal ecotype populations in coastal Monterey Bay

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2018 Po-Nan Li

, Jonathan Herrmann, Bradley B. Tolar

, Frédéric Poitevin, Rasika Ramdasi, John R. Bargar, David A. Stahl, Grant J. Jensen, Christopher A. Francis

, Soichi Wakatsuki, Henry van den Bedem

Nutrient transport suggests an evolutionary basis for charged archaeal surface layer proteins

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2017 Julian Damashek, Christopher A. Francis

Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes

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Kabir G. Peay, Christian von Sperber, Emily Cardarelli, Hirokazu Toju, Christopher A. Francis

, Oliver A. Chadwick, Peter M. Vitousek

Convergence and contrast in the community structure of Bacteria, Fungi and Archaea along a tropical elevation–climate gradient

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Christian von Sperber, Oliver A. Chadwick, Karen L. Casciotti, Kabir G. Peay, Christopher A. Francis

, Amy E. Kim, Peter M. Vitousek

Controls of nitrogen cycling evaluated along a well-characterized climate gradient

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B. B. Tolar, J. Herrmann, Bargar, H. van den Bedem, S. Wakatsuki, C. A. Francis

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea

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J. A. Lee, C. A. Francis

Deep nirS amplicon sequencing of San Francisco Bay sediments enables prediction of geography and environmental conditions from denitrifying community composition

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2016 Jessica A. Lee, Christopher A. Francis

Spatiotemporal Characterization of San Francisco Bay Denitrifying Communities: a Comparison of nirK and nirS Diversity and Abundance

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Julian Damashek, Karen L. Casciotti, Christopher A. Francis

Variable Nitrification Rates Across Environmental Gradients in Turbid, Nutrient-Rich Estuary Waters of San Francisco Bay

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J. M. Smith, J. Damashek, F. P. Chavez, C. A. Francis

Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean

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2015 S. C. Ying, J. Damashek, S. Fendorf, C. A. Francis

Indigenous arsenic(V)-reducing microbial communities in redox-fluctuating near-surface sediments of the Mekong Delta

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2014 Jason M. Smith, Francisco P. Chavez, Christopher A. Francis

Ammonium Uptake by Phytoplankton Regulates Nitrification in the Sunlit Ocean

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Jason M. Smith, Annika C. Mosier, Christopher A. Francis

Spatiotemporal Relationships Between the Abundance, Distribution, and Potential Activities of Ammonia-Oxidizing and Denitrifying Microorganisms in Intertidal Sediments

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George F. Wells, Cindy H. Wu, Yvette M. Piceno, Brad Eggleston, Eoin L. Brodie

, Todd Z. DeSantis, Gary L. Andersen, Terry C. Hazen, Christopher A. Francis

, Craig S. Criddle

Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes

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Jason M. Smith, Karen L. Casciotti, Francisco P. Chavez, Christopher A. Francis

Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters

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Julian Damashek, Jason M. Smith, Annika C. Mosier, Christopher A. Francis

Benthic ammonia oxidizers differ in community structure and biogeochemical potential across a riverine delta

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All papers authored by Christopher Francis