Alexandre M. J. J. Bonvin

Papers authored by Alexandre M. J. J. Bonvin

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2009 Marc van Dijk, Alexandre M. J. J. Bonvin

3D-DART: a DNA structure modelling server

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Julija Romanuka, Gert E. Folkers

, Nikolaos Biris, Evgeny Tishchenko, Hans Wienk, Alexandre M. J. J. Bonvin

, Robert Kaptein, Rolf Boelens

Specificity and Affinity of Lac Repressor for the Auxiliary Operators O2 and O3 Are Explained by the Structures of Their Protein–DNA Complexes

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Dirk Eggink

, Johannes P. M. Langedijk, Alexandre M. J. J. Bonvin

, Yiqun Deng, Min Lu, Ben Berkhout, Rogier W. Sanders

Detailed Mechanistic Insights into HIV-1 Sensitivity to Three Generations of Fusion Inhibitors

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Antonio Rosato, Anurag Bagaria, David Baker, Benjamin Bardiaux, Andrea Cavalli, Jurgen F. Doreleijers, Andrea Giachetti, Paul Guerry, Peter Güntert, Torsten Herrmann, Yuanpeng J. Huang, Hendrik R. A. Jonker, Binchen Mao, Therese E. Malliavin, Gaetano T. Montelione and 6 other authors

CASD-NMR: critical assessment of automated structure determination by NMR

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2010 Alexandre M. J. J. Bonvin

, Antonio Rosato, Tsjerk A. Wassenaar

The eNMR platform for structural biology

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Mickael Krzeminski, Karine Loth, Rolf Boelens, Alexandre Mjj J. J. Bonvin

SAMPLEX: Automatic mapping of perturbed and unperturbed regions of proteins and complexes

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Masakazu Kobayashi, Eiso Ab, Alexander M. J. J. Bonvin

, Gregg Siegal

Structure of the DNA-bound BRCA1 C-terminal Region from Human Replication Factor C p140 and Model of the Protein-DNA Complex

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Panagiotis L. Kastritis

, Alexandre M. J. J. Bonvin

Are Scoring Functions in Protein−Protein Docking Ready to Predict Interactomes? Clues from a Novel Binding Affinity Benchmark

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Sjoerd J. de Vries, Marc van Dijk, Alexandre M. J. J. Bonvin

The HADDOCK web server for data-driven biomolecular docking

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Marc van Dijk, Alexandre M. J. J. Bonvin

Pushing the limits of what is achievable in protein-DNA docking: benchmarking HADDOCK's performance

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Tanja Schneider, Thomas Kruse, Reinhard Wimmer

, Imke Wiedemann, Vera Sass, Ulrike Pag, Andrea Jansen, Allan K. Nielsen, Per H. Mygind, Dorotea S. Raventos, Søren Neve, Birthe Ravn, Alexandre M. J. J. Bonvin

, Leonardo De Maria, Anders S. Andersen and 3 other authors

Plectasin, a Fungal Defensin, Targets the Bacterial Cell Wall Precursor Lipid II

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Sjoerd J. de Vries, Adrien S. J. Melquiond

, Panagiotis L. Kastritis

, Ezgi Karaca, Annalisa Bordogna, Marc van Dijk, João P. G. L. M. Rodrigues, Alexandre M. J. J. Bonvin

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions

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Ludovic Carlier, Christian Koehler, Daniele Veggi, Mariagrazia Pizza, Marco Soriani, Rolf Boelens, Alexandre M. J. J. Bonvin

NMR resonance assignments of NarE, a putative ADP-ribosylating toxin from Neisseria meningitidis

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Giuseppe Nicastro, Sokol V. Todi, Ezgi Karaca, Alexandre M. J. J. Bonvin

, Henry L. Paulson, Annalisa Pastore

Understanding the Role of the Josephin Domain in the PolyUb Binding and Cleavage Properties of Ataxin-3

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A. Neumoin, A. Leonchiks, P. Petit, L. Vuillard, M. Pizza, M. Soriani, R. Boelens, A. M. J. J. Bonvin

1H, 13C and 15N assignment of the GNA1946 outer membrane lipoprotein from Neisseria meningitidis

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2011 Jia-Hau Liu, Tanuja Singh, Albert M. Wu, Sabine André, Martin Lensch, Alexandre M. J. J. Bonvin

, Mickael Krzeminski, Hans-Christian Siebert, Herbert Kaltner, Hans-Joachim Gabius

, June H. Wu

Adhesion/growth-regulatory galectins: insights into their ligand selectivity using natural glycoproteins and glycotopes.

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Mickael Krzeminski, Tanuja Singh, Sabine André, Martin Lensch, Albert M. Wu, Alexandre M. J. J. Bonvin

, Hans-Joachim Gabius

Human galectin-3 (Mac-2 antigen): Defining molecular switches of affinity to natural glycoproteins, structural and dynamic aspects of glycan binding by flexible ligand docking and putative regulatory sequences in the proximal promoter region

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Christian Koehler, Ludovic Carlier, Daniele Veggi, Enrico Balducci, Federica Di Marcello, Mario Ferrer-Navarro, Mariagrazia Pizza, Xavier Daura, Marco Soriani, Rolf Boelens, Alexandre M. J. J. Bonvin

Structural and Biochemical Characterization of NarE, an Iron-containing ADP-ribosyltransferase from Neisseria meningitidis

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Eric Escobar-Cabrera, Mark Okon, Desmond K. W. Lau, Christopher F. Dart, Alexandre M. J. J. Bonvin

, Lawrence P. McIntosh

Characterizing the N- and C-terminal Small Ubiquitin-like Modifier (SUMO)-interacting Motifs of the Scaffold Protein DAXX

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Sjoerd J. de Vries, Alexandre M. J. J. Bonvin

CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK

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Papers authored by Alexandre M. J. J. Bonvin