Alexandre M. J. J. Bonvin

Papers authored by Alexandre M. J. J. Bonvin

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2006 Alexandre Mjj J. J. Bonvin

Flexible protein–protein docking

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Lucy Rutten, Jeroen Geurtsen, Wietske Lambert, Jeroen J. M. Smolenaers, Alexandre M. Bonvin

, Alex de Haan, Peter van der Ley, Maarten R. Egmond, Piet Gros, Jan Tommassen

Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa

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Eiso Ab, David J. R. Pugh, Robert Kaptein, Rolf Boelens, Alexandre M. J. J. Bonvin

Direct Use of Unassigned Resonances in NMR Structure Calculations with Proxy Residues

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Sjoerd J. de Vries, Alexandre M. J. J. Bonvin

Intramolecular surface contacts contain information about protein-protein interface regions

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J. P. M. Langedijk, G. Fuentes, R. Boshuizen, A. M. J. J. Bonvin

Two-rung Model of a Left-handed β-Helix for Prions Explains Species Barrier and Strain Variation in Transmissible Spongiform Encephalopathies

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Aalt D. J. van Dijk, Alexandre M. J. J. Bonvin

Solvated docking: introducing water into the modelling of biomolecular complexes

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2007 Ellen H. Jeninga, Olivier van Beekum, Aalt D. J. van Dijk, Nicole Hamers, Brenda I. Hendriks-Stegeman, Alexandre M. J. J. Bonvin

, Ruud Berger, Eric Kalkhoven

Impaired Peroxisome Proliferator-Activated Receptor γ Function through Mutation of a Conserved Salt Bridge (R425C) in Familial Partial Lipodystrophy

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Simona Tomaselli, Laura Ragona, Lucia Zetta, Michael Assfalg

, Pasquale Ferranti, Renato Longhi, Alexandre M. J. J. Bonvin

, Henriette Molinari

NMR-based modeling and binding studies of a ternary complex between chicken liver bile acid binding protein and bile acids

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Sjoerd J. de Vries, Aalt D. J. van Dijk, Mickael Krzeminski, Mark van Dijk, Aurelien Thureau, Victor Hsu, Tsjerk Wassenaar, Alexandre M. J. J. Bonvin

HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets

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2008 Gloria Fuentes, Aalt D. J. van Dijk, Aalt D. J. Dijk, Alexandre M. J. J. Bonvin

Nuclear Magnetic Resonance-Based Modeling and Refinement of Protein Three-Dimensional Structures and Their Complexes

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Fernando Corrêa, Roberto Kopke Salinas, Alexandre M. J. J. Bonvin

, Chuck S. Farah

Deciphering the role of the electrostatic interactions in the α-tropomyosin head-to-tail complex

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Marc van Dijk, Alexandre M. J. J. Bonvin

A protein-DNA docking benchmark

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Sjoerd J. de Vries, Alexandre M. J. J. Bonvin

How Proteins Get in Touch: Interface Prediction in the Study of Biomolecular Complexes

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Rogier W. Sanders, Shang-Te D. Hsu

, Eelco van Anken, I. Marije Liscaljet, Martijn Dankers, Ilja Bontjer, Aafke Land, Ineke Braakman, Alexandre M. J. J. Bonvin

, Ben Berkhout

Evolution Rescues Folding of Human Immunodeficiency Virus-1 Envelope Glycoprotein GP120 Lacking a Conserved Disulfide Bond

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Christopher J. Arnusch, Alexandre M. J. J. Bonvin

, Anne Marie Verel, Wouter T. M. Jansen, Rob M. J. Liskamp, Ben de Kruijff, Roland J. Pieters, Eefjan Breukink

The Vancomycin−Nisin(1−12) Hybrid Restores Activity against Vancomycin Resistant Enterococci †

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Sascha Jung, Aj J. Dingley, René Augustin, Friederike Anton-Erxleben, Mareike Stanisak, Christoph Gelhaus, Thomas Gutsmann, Mu U. Hammer, Rainer Podschun, Am M. J. J. Bonvin

, Matthias Leippe, Tc C. G. Bosch, Joachim Grotzinger

Hydramacin-1, Structure and Antibacterial Activity of a Protein from the Basal Metazoan Hydra

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2009 Sjoerd J. L. van Wijk, Sjoerd J. de Vries, Patrick Kemmeren, Anding Huang, Rolf Boelens, Alexandre M. J. J. Bonvin

, H. Th Marc Timmers

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system

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Lucy Rutten, Jean-Paul B. A. Mannie, Christopher M. Stead, Christian R. H. Raetz, C. Michael Reynolds, M. Stephen Trent, C. Michael Reynolds, Alexandre M. J. J. Bonvin

, Jan P. Tommassen, Maarten R. Egmond, M. Stephen Trent, Piet Gros

Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium

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Kostas Repanas, Gloria Fuentes, Serge X. Cohen, Alexandre M. J. J. Bonvin

, Anastassis Perrakis

Insights into the DNA cleavage mechanism of human LINE-1 retrotransposon endonuclease

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Mickael Krzeminski, Gloria Fuentes, Rolf Boelens, Alexandre M. J. J. Bonvin

MINOES: A new approach to select a representative ensemble of structures in NMR studies of (partially) unfolded states. Application to Δ25-PYP

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Papers authored by Alexandre M. J. J. Bonvin