Ivaylo Ivanov - Dissemin

Papers authored by Ivaylo Ivanov

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2013 Chris A. Brosey, Chunli Yan, Susan E. Tsutakawa, William T. Heller, Robert P. Rambo, John A. Tainer, Ivaylo Ivanov

, Walter J. Chazin,

A new structural framework for integrating replication protein A into DNA processing machinery

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2012 Ivaylo Ivanov

Double-edged sword for catalysis

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Jordi Querol-Audí, Chunli Yan, Xiaojun Xu, Susan E. Tsutakawa, Miaw-Sheue Tsai, John A. Tainer, Priscilla K. Cooper, Eva Nogales, Ivaylo Ivanov

Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability

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Xiaolin Cheng, Ivaylo Ivanov

Molecular dynamics

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2011 Susan E. Tsutakawa, Adam W. Van Wynsberghe, Bret D. Freudenthal, Christopher P. Weinacht, Lokesh Gakhar, M. Todd Washington, M. Todd Washington, Zhihao Zhuang, John A. Tainer, Ivaylo Ivanov

Solution X-ray scattering combined with computational modeling reveals multiple conformations of covalently bound ubiquitin on PCNA

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Tommy Sander, Bente Frølund, Anne Techau Bruun, Ivaylo Ivanov

, James Andrew McCammon, Thomas Balle

New insights into the GABAA receptor structure and orthosteric ligand binding: Receptor modeling guided by experimental data

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Sebastian Fritsch, Ivaylo Ivanov

, Hailong Wang, Xiaolin Cheng

Ion Selectivity Mechanism in a Bacterial Pentameric Ligand-Gated Ion Channel

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2010 John A. Tainer, J. Andrew McCammon, J. Andrew McCammon, Ivaylo Ivanov

Recognition of the Ring-Opened State of Proliferating Cell Nuclear Antigen by Replication Factor C Promotes Eukaryotic Clamp-Loading

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2009 Xiaolin Cheng, Ivaylo Ivanov

, Hailong Wang, Steven M. Sine, J. Andrew McCammon, J. Andrew McCammon

Molecular-Dynamics Simulations of ELIC—a Prokaryotic Homologue of the Nicotinic Acetylcholine Receptor

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Rommie E. Amaro, Xiaolin Cheng, Ivaylo Ivanov

, Dong Xu, J. Andrew McCammon, J. Andrew McCammon

Characterizing Loop Dynamics and Ligand Recognition in Human- and Avian-Type Influenza Neuraminidases via Generalized Born Molecular Dynamics and End-Point Free Energy Calculations

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2008 Alemayehu A. Gorfe, Chia-En A. Chang, Ivaylo Ivanov

, J. Andrew McCammon, J. Andrew McCammon

Dynamics of the Acetylcholinesterase Tetramer

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Abhigyan Som, Satyavani Vemparala, Ivaylo Ivanov

, Gn Tew

Synthetic mimics of antimicrobial peptides

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2007 Xiaolin Cheng, Ivaylo Ivanov

, Hailong Wang, Steven M. Sine, J. Andrew McCammon, J. Andrew McCammon

Nanosecond-Timescale Conformational Dynamics of the Human α7 Nicotinic Acetylcholine Receptor

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Ivaylo Ivanov

, Xiaolin Cheng, Steven M. Sine, J. Andrew McCammon, J. Andrew McCammon

Barriers to Ion Translocation in Cationic and Anionic Receptors from the Cys-Loop Family

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Ivaylo Ivanov

, John A. Tainer, J. Andrew McCammon, J. Andrew McCammon

Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV

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2006 Ivaylo Ivanov

, Bin Chen, Simone Raugei, Michael L. Klein

Relative pKaValues from First-Principles Molecular Dynamics: The Case of Histidine Deprotonation

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Vojislava Pophristic, Satyavani Vemparala, Ivaylo Ivanov

, Zhiwei W. Liu, Michael L. Klein, William F. DeGrado

Controlling the Shape and Flexibility of Arylamides: A Combined ab Initio, ab Initio Molecular Dynamics, and Classical Molecular Dynamics Study †

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Ivaylo Ivanov

, Brian R. Chapados, J. Andrew McCammon, J. Andrew McCammon, John A. Tainer

Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications

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Ivaylo Ivanov

, Satyavani Vemparala, Vojislava Pophristic, Kenichi Kuroda, William F. DeGrado, J. Andrew McCammon, J. Andrew McCammon, Michael L. Klein

Characterization of Nonbiological Antimicrobial Polymers in Aqueous Solution and at Water−Lipid Interfaces from All-Atom Molecular Dynamics

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Satyavani Vemparala, Ivaylo Ivanov

, Vojislava Pophristic, Katrin Spiegel, Michael L. Klein

Ab initio calculations of intramolecular parameters for a class of arylamide polymers

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Papers authored by Ivaylo Ivanov