Papers authored by Pengyu Ren
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Pengyu Ren
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Trypsin-Ligand Binding Free Energy Calculation with AMOEBA
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Calculation of protein–ligand binding free energy by using a polarizable potential
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A Transferable Coarse-Grained Model for Hydrogen Bonding Liquids
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Pengyu Ren ,
Jay W. Ponder
Polarizable Atomic Multipole Solutes in a Poisson-Boltzmann Continuum
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Thomas A. Darden,
Pengyu Ren
Simulation of Ca2+ and Mg2+ solvation using polarizable atomic multipole potential
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Jay W. Ponder
Temperature and pressure dependence of the AMOEBA water model
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Pengyu Ren ,
Jay W. Ponder
Ion Solvation Thermodynamics from Simulation with a Polarizable Force Field
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Jay W. Ponder
Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation
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Jay W. Ponder
Consistent Treatment of Inter- and Intramolecular Polarization in Molecular Mechanics Calculations
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J. R. Fried
The COMPASS force field: Parameterization and validation for phosphazenes
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