Peggy Farnham - Dissemin

Papers authored by Peggy Farnham

This paper is made freely available by the publisher.

2011 Patrick Trojer, Alina R. Cao, Zhonghua Gao, Yan Li, Jin Zhang, Xiaoqin Xu, Guohong Li, Regine Losson, Hediye Erdjument-Bromage, Paul Tempst, Peggy J. Farnham

, Danny Reinberg

L3MBTL2 Protein Acts in Concert with PcG Protein-Mediated Monoubiquitination of H2A to Establish a Repressive Chromatin Structure

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Sushma Iyengar, Alexey V. Ivanov, Victor X. Jin, Frank J. Rauscher, Peggy J. Farnham

Functional Analysis of KAP1 Genomic Recruitment

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Kimberly R. Blahnik, Lei Dou, Lorigail Echipare, Sushma Iyengar, Henriette O'Geen, Erica Sanchez, Yongjun Zhao, Marco A. Marra, Martin Hirst, Joseph F. Costello, Ian Korf, Peggy J. Farnham

Characterization of the Contradictory Chromatin Signatures at the 3′ Exons of Zinc Finger Genes

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Alina R. Cao, Roman Rabinovich, Maoxiong Xu, Xiaoqin Xu, Victor X. Jin, Peggy J. Farnham

Genome-wide Analysis of Transcription Factor E2F1 Mutant Proteins Reveals That N- and C-terminal Protein Interaction Domains Do Not Participate in Targeting E2F1 to the Human Genome*

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This paper is available in a repository.

Seth Frietze, Peggy J. Farnham

Transcription Factor Effector Domains

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Henriette O’Geen, Lorigail Echipare, Peggy J. Farnham

Using ChIP-Seq Technology to Generate High-Resolution Profiles of Histone Modifications

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2010 Seth Frietze, Henriette O'Geen, Kimberly R. Blahnik, Victor X. Jin, Peggy J. Farnham

ZNF274 Recruits the Histone Methyltransferase SETDB1 to the 3′ Ends of ZNF Genes

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Bradley E. Bernstein, John A. Stamatoyannopoulos, Joseph F. Costello, Bing Ren, Aleksandar Milosavljevic, Alexander Meissner, Manolis Kellis, Marco A. Marra, Arthur L. Beaudet, Joseph R. Ecker, Peggy J. Farnham

, Martin Hirst, Eric S. Lander, Tarjei S. Mikkelsen, James A. Thomson

The NIH Roadmap Epigenomics Mapping Consortium

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R. Alan Harris, R. Alan Harris

, Ting Wang, Cristian Coarfa, Raman P. Nagarajan, Chibo Hong, Sara L. Downey, Brett E. Johnson, Shaun D. Fouse, Allen Delaney, Yongjun Zhao, Adam Olshen, Tracy Ballinger, Xin Zhou, Kevin J. Forsberg and 27 other authors

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

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Sheryl R. Krig, Jamie K. Miller, Seth Frietze, Laurel A. Beckett, Richard M. Neve, Peggy J. Farnham

, Paul I. Yaswen, Colleen A. Sweeney

ZNF217, a candidate breast cancer oncogene amplified at 20q13, regulates expression of the ErbB3 receptor tyrosine kinase in breast cancer cells

Download from www.ncbi.nlm.nih.gov

Vitalina M. Komashko, Peggy J. Farnham

5-azacytidine treatment reorganizes genomic histone modification patterns

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Henriette O’Geen, Seth Frietze, Peggy J. Farnham

Using ChIP-seq Technology to Identify Targets of Zinc Finger Transcription Factors

Download from www.ncbi.nlm.nih.gov

Henriette O'Geen, Yu-Hsuan Lin, Xiaoqin Xu, Lorigail Echipare, Vitalina M. Komashko, Daniel He, Seth Frietze, Osamu Tanabe, Lihong Shi, Maureen A. Sartor, James D. Engel, Peggy J. Farnham

Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes

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2009 Kimberly R. Blahnik, Lei Dou, Henriette O’Geen, Timothy McPhillips, Xiaoqin Xu, Alina R. Cao, Sushma Iyengar, Charles M. Nicolet, Bertram Ludäscher, Ian Korf, Peggy J. Farnham

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

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Seth Frietze, Xun Lan, Victor X. Jin, Peggy J. Farnham

Genomic Targets of the KRAB and SCAN Domain-containing Zinc Finger Protein 263*

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Tohru Fujiwara, Henriette O'Geen, Sunduz Keles, Kimberly Blahnik, Amelia K. Linnemann, Yoon-A. Kang, Kyunghee Choi, Peggy J. Farnham

, Emery H. Bresnick

Discovering Hematopoietic Mechanisms Through Genome-Wide Analysis of GATA Factor Chromatin Occupancy

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Victor X. Jin, Jeff Apostolos, Naga Satya Venkateswara Ra Nagisetty, Peggy J. Farnham

W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data

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Peggy J. Farnham

Insights from genomic profiling of transcription factors

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2008 Rebecca Cotterman, Victor X. Jin, Sheryl R. Krig, Jessica M. Lemen, Alice Wey, Peggy J. Farnham

, Paul S. Knoepfler

N-Myc regulates a widespread euchromatic program in the human genome partially independent of its role as a classical transcription factor

Download from cancerres.aacrjournals.org

Alina Rabinovich, Victor X. Jin, Roman Rabinovich, Xiaoqin Xu, Peggy J. Farnham

E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites

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Papers authored by Peggy Farnham