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Papers authored by Adam Siepel

This paper is made freely available by the publisher.

2005 Pedersen Js, Jakob Skou Pedersen, Gill Bejerano, Adam Siepel

ORCID

, Kate R. Rosenbloom, Kerstin Lindblad-Toh, Lander Es, Eric S. Lander, Jim Kent, Webb Miller, David Haussler

Identification and Classification of Conserved RNA Secondary Structures in the Human Genome

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2004 Vladimir Jojic, Nebojsa Jojic, Chris Meek, Dan Geiger, Adam Siepel

ORCID

, David Haussler, D. Heckerman

Efficient approximations for learning phylogenetic HMM models from data

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Adam Siepel

ORCID

, David Haussler

Computational identification of evolutionarily conserved exons

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Jan J. van der Poel, Pieter J. deJong, Christian von Mering, Webb Miller, LaDeana W. Hillier, sequence and assembly: Genome fingerprint Map, Jerry B. Dodgson, Ewan Birney, Asif T. Chinwalla, Shiaw-Pyng Yang, Colin Kremitzki, Paul F. Cliften, Dan Layman, Sandra W. Clifton, Vincent Magrini and 172 other authors

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.

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2003 Adam Siepel

ORCID

, David Haussler

Phylogenetic Estimation of Context-Dependent Substitution Rates by Maximum Likelihood

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J. W. Thomas, J. W. Touchman, R. W. Blakesley, G. G. Bouffard, S. M. Beckstrom-Sternberg, E. H. Margulies, M. Blanchette, A. C. Siepel

ORCID

, P. J. Thomas, J. C. McDowell, B. Maskeri, N. F. Hansen, M. S. Schwartz, R. J. Weber, W. J. Kent and 56 other authors

Comparative analyses of multi-species sequences from targeted genomic regions

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Adam C. Siepel

ORCID

An Algorithm to Enumerate Sorting Reversals for Signed Permutations

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Adam Siepel

ORCID

, David Haussler

Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis

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2002 Adam C. Siepel

ORCID

, J. Yves Parlange, Tammo S. Steenhuis, Calvin W. Rose, J.-Yves Parlange, Gregory F. McIsaac

A Simplified Hillslope Erosion Model With Vegetation Elements for Practical Applications

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Bernard M. E. Moret, Adam C. Siepel

ORCID

, Jijun Tang, Tao Liu

Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data

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This paper was not found in any repository, but could be made available legally by the author.

Adam C. Siepel

ORCID

An algorithm to enumerate all sorting reversals

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2001 Adam C. Siepel

ORCID

, Bernard M. E. Moret

Finding an Optimal Inversion Median: Experimental Results

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Adam C. Siepel

ORCID

, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral

ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources

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A. C. Siepel

ORCID

, A. N. Tolopko, A. D. Farmer, P. A. Steadman, F. D. Schilkey, B. D. Perry, W. D. Beavis

An integration platform for heterogeneous bioinformatics software components

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1999 M. P. Skupski, M. Booker, A. Farmer, M. Harpold, W. Huang, J. Inman, D. Kiphart, C. Kodira, S. Root, F. Schilkey, J. Schwertfeger, A. Siepel

ORCID

, D. Stamper, N. Thayer, R. Thompson and 3 other authors

The Genome Sequence DataBase: towards an integrated functional genomics resource.

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1997 C. Harger, M. Skupski, E. Allen, C. Clark, D. Crowley, E. Dickinson, D. Easley, A. Espinosa-Lujan, A. Farmer, C. Fields, L. Flores, L. Harris, G. Keen, M. Manning, M. McLeod and 21 other authors

The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes.

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1995 Adam C. Siepel

ORCID

, Aaron L. Halpern, Catherine Macken, Bette T. M. Korber

A Computer Program Designed to Screen Rapidly for HIV Type 1 Intersubtype Recombinant Sequences

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1970 Yu Zhang, Giltae Song, Tomás Vinar

ORCID

, Eric D. Green, Adam C. Siepel

ORCID

, Webb Miller, M. Vingron, L. Wong

Reconstructing the Evolutionary History of Complex Human Gene Clusters

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Adam Siepel

ORCID

, David Haussler

Phylogenetic Hidden Markov Models

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