All papers authored by Andre Carvalho
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2019
Juliana Coatrini Soares 
,
Andrey Coatrini Soares ,
Valquiria Cruz Rodrigues ,
Matias Eliseo Melendez ,
Alexandre Cesar Santos,
Eliney Ferreira Faria ,
Rui M. Reis ,
Andre Lopes Carvalho ,
Osvaldo N. Oliveira
,
Andrey Coatrini Soares ,
Valquiria Cruz Rodrigues ,
Matias Eliseo Melendez ,
Alexandre Cesar Santos,
Eliney Ferreira Faria ,
Rui M. Reis ,
Andre Lopes Carvalho ,
Osvaldo N. Oliveira
Detection of the Prostate Cancer Biomarker PCA3 with Electrochemical and Impedance-Based Biosensors
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2018
Andrey Coatrini Soares ,
Juliana Coatrini Soares ,
Valquiria Cruz Rodrigues ,
Heveline Dal Magro Follmann,
Lidia Maria Rebolho Batista Arantes ,
Ana Carolina Carvalho ,
Matias Eliseo Melendez ,
José Humberto T. G. Fregnani,
Rui Manuel Reis ,
André Lopes Carvalho ,
Osvaldo N. Oliveira
,
Juliana Coatrini Soares ,
Valquiria Cruz Rodrigues ,
Heveline Dal Magro Follmann,
Lidia Maria Rebolho Batista Arantes ,
Ana Carolina Carvalho ,
Matias Eliseo Melendez ,
José Humberto T. G. Fregnani,
Rui Manuel Reis ,
André Lopes Carvalho ,
Osvaldo N. Oliveira
Microfluidic-Based Genosensor To Detect Human Papillomavirus (HPV16) for Head and Neck Cancer
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Zehua Wang,
Bo Yang,
Min Zhang,
Weiwei Guo,
Zhiyuan Wu,
Yue Wang,
Lin Jia,
Song Li,
Wen Xie,
Da Yang ,
Samantha J. Caesar-Johnson,
John A. Demchok,
Ina Felau,
Melpomeni Kasapi,
Martin L. Ferguson
and 720 other authors
Download from dspace.library.uu.nl
,
Samantha J. Caesar-Johnson,
John A. Demchok,
Ina Felau,
Melpomeni Kasapi,
Martin L. Ferguson
and 720 other authors
Download from dspace.library.uu.nl
Jianfang Liu,
Tara Lichtenberg,
Katherine A. Hoadley ,
Laila M. Poisson,
Alexander J. Lazar,
Andrew D. Cherniack,
Albert J. Kovatich,
Christopher C. Benz,
Douglas A. Levine,
Adrian V. Lee,
Larsson Omberg,
Denise M. Wolf,
Craig D. Shriver,
Vesteinn Thorsson,
Hai Hu
and 716 other authors
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,
Laila M. Poisson,
Alexander J. Lazar,
Andrew D. Cherniack,
Albert J. Kovatich,
Christopher C. Benz,
Douglas A. Levine,
Adrian V. Lee,
Larsson Omberg,
Denise M. Wolf,
Craig D. Shriver,
Vesteinn Thorsson,
Hai Hu
and 716 other authors
Download from dspace.library.uu.nl
Alison M. Taylor,
Juliann Shih,
Gavin Ha,
Galen F. Gao,
Xiaoyang Zhang,
Ashton C. Berger,
Steven E. Schumacher,
Chen Wang,
Hai Hu,
Jianfang Liu,
Alexander J. Lazar,
Andrew D. Cherniack,
Rameen Beroukhim,
Matthew Meyerson,
Samantha J. Caesar-Johnson
and 714 other authors
Genomic and Functional Approaches to Understanding Cancer Aneuploidy
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Yuexin Liu,
Ashton C. Berger,
Sally N. Adebamowo,
Apurva M. Hegde,
Rupa S. Kanchi,
Anil Korkut,
Wenbin Liu,
Walter Lenoir,
Huihui Fan ,
Hui Shen,
Arvind Rao,
Visweswaran Ravikumar,
Andre Schultz,
Pavel Sumazin,
Xubin Li
and 735 other authors
,
Hui Shen,
Arvind Rao,
Visweswaran Ravikumar,
Andre Schultz,
Pavel Sumazin,
Xubin Li
and 735 other authors
A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers
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Tathiane M. Malta,
Artem Sokolov ,
Andrew J. Gentles,
Tomasz Burzykowski ,
Laila Poisson,
John N. Weinstein,
Bożena Kamińska ,
Joerg Huelsken,
Larsson Omberg,
Olivier Gevaert,
Antonio Colaprico,
Patrycja Czerwińska,
Sylwia Mazurek,
Lopa Mishra,
Holger Heyn
and 724 other authors
,
Andrew J. Gentles,
Tomasz Burzykowski ,
Laila Poisson,
John N. Weinstein,
Bożena Kamińska ,
Joerg Huelsken,
Larsson Omberg,
Olivier Gevaert,
Antonio Colaprico,
Patrycja Czerwińska,
Sylwia Mazurek,
Lopa Mishra,
Holger Heyn
and 724 other authors
Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation
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Zhongyuan Chen,
Xinxin Peng ,
Farshad Farshidfar,
Philip L. Lorenzi,
Xiaoyan Xu,
Yumeng Wang,
Lin Tan,
Feixiong Cheng,
George V. Thomas,
Lingxiang Liu,
Zhongming Zhao,
Huiwen Zhang,
Kamalika Mojumdar ,
Jun Li,
Calena Marchand
and 728 other authors
,
Farshad Farshidfar,
Philip L. Lorenzi,
Xiaoyan Xu,
Yumeng Wang,
Lin Tan,
Feixiong Cheng,
George V. Thomas,
Lingxiang Liu,
Zhongming Zhao,
Huiwen Zhang,
Kamalika Mojumdar ,
Jun Li,
Calena Marchand
and 728 other authors
Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
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Joel Saltz,
Rajarsi Gupta,
Le Hou,
Tahsin Kurc,
Pankaj Singh,
Vu Nguyen,
Dimitris Samaras,
Kenneth R. Shroyer,
Tianhao Zhao,
Rebecca Batiste,
John Van Arnam,
Ilya Shmulevich,
Arvind U. K. Rao,
Alexander J. Lazar,
Ashish Sharma
and 724 other authors
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Theo A. Knijnenburg,
Linghua Wang,
Michael T. Zimmermann,
Nyasha Chambwe ,
Galen F. Gao,
Andrew D. Cherniack,
Huihui Fan ,
Hui Shen,
Gregory P. Way,
Casey S. Greene,
Yuexin Liu,
Rehan Akbani,
Bin Feng,
Lawrence A. Donehower,
Chase Miller
and 730 other authors
,
Galen F. Gao,
Andrew D. Cherniack,
Huihui Fan ,
Hui Shen,
Gregory P. Way,
Casey S. Greene,
Yuexin Liu,
Rehan Akbani,
Bin Feng,
Lawrence A. Donehower,
Chase Miller
and 730 other authors
Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
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Gregory P. Way,
Francisco Sanchez-Vega ,
Konnor La,
Joshua Armenia,
Walid K. Chatila,
Augustin Luna,
Chris Sander,
Andrew D. Cherniack,
Marco Mina,
Giovanni Ciriello,
Nikolaus Schultz,
Yolanda Sanchez,
Casey S. Greene,
Samantha J. Caesar-Johnson,
John A. Demchok
and 715 other authors
,
Konnor La,
Joshua Armenia,
Walid K. Chatila,
Augustin Luna,
Chris Sander,
Andrew D. Cherniack,
Marco Mina,
Giovanni Ciriello,
Nikolaus Schultz,
Yolanda Sanchez,
Casey S. Greene,
Samantha J. Caesar-Johnson,
John A. Demchok
and 715 other authors
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
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Kuan-Lin Huang,
R. Jay Mashl,
Yige Wu,
Deborah I. Ritter,
Jiayin Wang,
Clara Oh,
Marta Paczkowska,
Sheila Reynolds,
Matthew A. Wyczalkowski ,
Ninad Oak,
Adam D. Scott,
Michal Krassowski,
Andrew D. Cherniack,
Kathleen E. Houlahan,
Reyka Jayasinghe
and 748 other authors
,
Ninad Oak,
Adam D. Scott,
Michal Krassowski,
Andrew D. Cherniack,
Kathleen E. Houlahan,
Reyka Jayasinghe
and 748 other authors
Pathogenic Germline Variants in 10,389 Adult Cancers
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Michael Seiler,
Shouyong Peng,
Anant A. Agrawal,
James Palacino,
Teng Teng,
Ping Zhu,
Peter G. Smith,
Silvia Buonamici,
Lihua Yu,
Samantha J. Caesar-Johnson,
John A. Demchok,
Ina Felau,
Melpomeni Kasapi,
Martin L. Ferguson,
Carolyn M. Hutter
and 719 other authors
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Li Ding,
Matthew H. Bailey,
Eduard Porta-Pardo,
Vesteinn Thorsson,
Antonio Colaprico,
Denis Bertrand,
David L. Gibbs,
Amila Weerasinghe,
Kuan-Lin Huang,
Collin Tokheim,
Isidro Cortés-Ciriano ,
Reyka Jayasinghe,
Feng Chen,
Lihua Yu,
Sam Sun
and 732 other authors
,
Reyka Jayasinghe,
Feng Chen,
Lihua Yu,
Sam Sun
and 732 other authors
Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
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Hua-Sheng Chiu,
Sonal Somvanshi,
Ektaben Patel,
Ting-Wen Chen,
Vivek P. Singh,
Barry Zorman,
Sagar L. Patil ,
Yinghong Pan ,
Preethi H. Gunaratne,
Anil K. Sood,
Sujash S. Chatterjee,
Pavel Sumazin,
Samantha J. Caesar-Johnson,
John A. Demchok,
Ina Felau
and 737 other authors
Download from doi.org
,
Yinghong Pan ,
Preethi H. Gunaratne,
Anil K. Sood,
Sujash S. Chatterjee,
Pavel Sumazin,
Samantha J. Caesar-Johnson,
John A. Demchok,
Ina Felau
and 737 other authors
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Jiexin J. Zhang,
Matthew H. Bailey,
W. Zhang,
Collin Tokheim,
Eduard Porta-Pardo,
Sohini Sengupta,
Denis Bertrand,
Amila Weerasinghe,
Antonio Colaprico,
Michael C. Wendl,
Jaegil Kim,
Brendan Reardon,
Patrick Kwok-Shing Ng,
Kang Jin Jeong,
Song Cao
and 757 other authors
Comprehensive Characterization of Cancer Driver Genes and Mutations
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Qingsong Gao,
Wen-Wei Liang,
Steven M. Foltz ,
Gnanavel Mutharasu,
Reyka G. Jayasinghe,
Song Cao,
Wen-Wei Liao,
Sheila M. Reynolds,
Matthew A. Wyczalkowski ,
Lijun Yao,
Lihua Yu,
Sam Q. Sun,
Ken Chen,
Alexander J. Lazar,
Ryan C. Fields
and 729 other authors
,
Gnanavel Mutharasu,
Reyka G. Jayasinghe,
Song Cao,
Wen-Wei Liao,
Sheila M. Reynolds,
Matthew A. Wyczalkowski ,
Lijun Yao,
Lihua Yu,
Sam Q. Sun,
Ken Chen,
Alexander J. Lazar,
Ryan C. Fields
and 729 other authors
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
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Reyka G. Jayasinghe,
Song Cao,
Qingsong Gao,
Michael C. Wendl,
Nam Sy Vo,
Sheila M. Reynolds,
Yanyan Zhao,
Héctor Climente-González,
Shengjie Chai,
Fang Wang,
Rajees Varghese,
Mo Huang,
Wen-Wei Liang,
Matthew A. Wyczalkowski,
Sohini Sengupta
and 734 other authors
Systematic Analysis of Splice-Site-Creating Mutations in Cancer
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Yang Liu,
Nilay S. Sethi,
Toshinori Hinoue,
Barbara G. Schneider,
Andrew D. Cherniack,
Francisco Sanchez-Vega ,
Jose A. Seoane,
Farshad Farshidfar,
Reanne Bowlby,
Mirazul Islam,
Jaegil Kim,
Walid Chatila,
Rehan Akbani,
Rupa S. Kanchi,
Charles S. Rabkin
and 728 other authors
,
Jose A. Seoane,
Farshad Farshidfar,
Reanne Bowlby,
Mirazul Islam,
Jaegil Kim,
Walid Chatila,
Rehan Akbani,
Rupa S. Kanchi,
Charles S. Rabkin
and 728 other authors
Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas
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