Papers authored by Ian Yang
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Andrew J. Gentles,
Tomasz Burzykowski ,
Laila Poisson,
John N. Weinstein,
Bożena Kamińska ,
Joerg Huelsken,
Larsson Omberg,
Olivier Gevaert,
Antonio Colaprico,
Patrycja Czerwińska,
Sylwia Mazurek,
Lopa Mishra,
Holger Heyn
and 724 other authors
Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation
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Farshad Farshidfar,
Philip L. Lorenzi,
Xiaoyan Xu,
Yumeng Wang,
Lin Tan,
Feixiong Cheng,
George V. Thomas,
Kamalika Mojumdar ,
Lingxiang Liu,
Jun Li,
Di Du,
Zhongming Zhao,
Huiwen Zhang
and 728 other authors
Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
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Ninad Oak,
Adam D. Scott,
Michal Krassowski,
Andrew D. Cherniack,
Kathleen E. Houlahan,
Reyka Jayasinghe
and 748 other authors
Pathogenic Germline Variants in 10,389 Adult Cancers
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Reyka Jayasinghe,
Feng Chen,
Lihua Yu,
Sam Sun
and 732 other authors
Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
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Yinghong Pan ,
Sujash S. Chatterjee,
Preethi H. Gunaratne,
Anil K. Sood,
Pavel Sumazin,
Samantha J. Caesar-Johnson,
John A. Demchok,
Ina Felau
and 737 other authors
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Galen F. Gao,
Andrew D. Cherniack,
Huihui Fan ,
Hui Shen,
Gregory P. Way,
Casey S. Greene,
Yuexin Liu,
Rehan Akbani,
Bin Feng,
Lawrence A. Donehower,
Chase Miller
and 730 other authors
Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
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Konnor La,
Joshua Armenia,
Walid K. Chatila,
Augustin Luna,
Chris Sander,
Andrew D. Cherniack,
Marco Mina,
Giovanni Ciriello,
Nikolaus Schultz,
Yolanda Sanchez,
Casey S. Greene,
Samantha J. Caesar-Johnson,
John A. Demchok
and 715 other authors
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
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Jose A. Seoane,
Farshad Farshidfar,
Reanne Bowlby,
Mirazul Islam,
Jaegil Kim,
Walid Chatila,
Rehan Akbani,
Rupa S. Kanchi,
Charles S. Rabkin
and 728 other authors
Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas
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Systematic Analysis of Splice-Site-Creating Mutations in Cancer
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Gnanavel Mutharasu,
Reyka G. Jayasinghe,
Song Cao,
Wen-Wei Liao,
Sheila M. Reynolds,
Matthew A. Wyczalkowski ,
Lijun Yao,
Lihua Yu,
Sam Q. Sun,
Ken Chen,
Alexander J. Lazar,
Ryan C. Fields
and 729 other authors
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
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Zhongyuan Chen,
Hu Chen,
Yutong Sun,
Fan Yao,
Jun Li,
Huiwen Zhang,
Jianfang Liu,
Craig D. Shriver,
Hai Hu,
Helen Piwnica-Worms,
Li Ma
and 722 other authors
Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types
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Kevin Brennan,
Alison M. Taylor,
Chen Wang,
Lauren Averett Byers,
Rehan Akbani,
Vonn Walter,
Chad J. Creighton,
Cristian Coarfa,
Juliann Shih,
Andrew D. Cherniack
and 745 other authors
Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
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Marco Mina,
Joshua Armenia,
Walid K. Chatila,
Augustin Luna,
Konnor C. La,
Sofia Dimitriadoy,
David L. Liu,
Havish S. Kantheti,
Sadegh Saghafinia,
Debyani Chakravarty,
Foysal Daian,
Qingsong Gao,
Matthew H. Bailey,
Wen-Wei Liang
and 742 other authors
Oncogenic Signaling Pathways in The Cancer Genome Atlas
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Zhicheng Zhou,
John N. Weinstein,
Han Liang,
Samantha J. Caesar-Johnson,
John A. Demchok,
Ina Felau,
Melpomeni Kasapi,
Martin L. Ferguson,
Carolyn M. Hutter,
Heidi J. Sofia,
Roy Tarnuzzer,
Zhining Wang
and 714 other authors
A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples
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Reid Shaw,
Wei Zhao,
Xiaoyang Zhang,
Andrea Ventura,
Yuexin Liu,
Donald E. Ayer ,
Peter J. Hurlin,
Andrew D. Cherniack,
Robert N. Eisenman,
Brady Bernard
and 721 other authors
Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
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Matthew H. Bailey,
Gordon Saksena,
Kyle R. Covington,
Cyriac Kandoth,
Chip Stewart,
Julian Hess,
Singer Ma,
Kami E. Chiotti,
Michael McLellan,
Heidi J. Sofia,
Carolyn Hutter,
Gad Getz,
David Wheeler,
Li Ding
and 719 other authors
Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines
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