All papers authored by John Reid
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Alex Hawkins-Hooker,
Henry Kenlay,
John E. Reid 
Projection layers improve deep learning models of regulatory DNA function
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Magdalena E. Strauß,
John E. Reid ,
Lorenz Wernisch
,
Lorenz Wernisch
GPseudoRank: a permutation sampler for single cell orderings
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2015
Reid Je,
John E. Reid ,
Lorenz Wernisch
,
Lorenz Wernisch
Pseudotime estimation: deconfounding single cell time series
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2014
John E. Reid ,
Lorenz Wernisch
,
Lorenz Wernisch
STEME: A Robust, Accurate Motif Finder for Large Data Sets
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2011
John E. Reid ,
Lorenz Wernisch
,
Lorenz Wernisch
STEME: efficient EM to find motifs in large data sets
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Céline Granier,
Vasily Gurchenkov,
Aitana Perea-Gomez,
Anne Camus,
Sascha Ott,
Costis Papanayotou,
Julian Iranzo,
Anne Moreau,
John Reid ,
Georgy Koentges,
Délara Sabéran-Djoneidi,
Jérôme Collignon
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,
Georgy Koentges,
Délara Sabéran-Djoneidi,
Jérôme Collignon
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2010
Hashem Koohy ,
Nigel P. Dyer,
John E. Reid ,
Georgy Koentges,
Sascha Ott
,
Nigel P. Dyer,
John E. Reid ,
Georgy Koentges,
Sascha Ott
An alignment-free model for comparison of regulatory sequences
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John E. Reid ,
Kenneth J. Evans,
Nigel Dyer,
Lorenz Wernisch,
Sascha Ott
,
Kenneth J. Evans,
Nigel Dyer,
Lorenz Wernisch,
Sascha Ott
Variable structure motifs for transcription factor binding sites
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2009
Mark Spensley,
Jae-Yean Kim,
Emma Picot,
John Reid ,
Sascha Ott,
Chris Helliwell,
Isabelle A. Carré
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,
Sascha Ott,
Chris Helliwell,
Isabelle A. Carré
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John E. (John E.) Reid ,
Sascha Ott,
Lorenz Wernisch
,
Sascha Ott,
Lorenz Wernisch
Transcriptional programs: Modelling higher order structure in transcriptional control
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