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All papers authored by Jürgen Zanghellini

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2021 Julia Brunmair

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, Laura Niederstaetter, Benjamin Neuditschko

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, Andrea Bileck

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, Mathias Gotsmy

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, Max Lennart Feuerstein, Lukas Janker

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, Clemens Langbauer, Jürgen Zanghellini

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, Samuel M. Meier-Menches

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, Christopher Gerner

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Finger sweat analysis enables short interval metabolic biomonitoring in humans

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2016 Jürgen Zanghellini

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, Matthias P. Gerstl, Michael Hanscho, Govind Nair, Georg Regensburger, Stefan Müller, Christian Jungreuthmayer

Toward Genome-Scale Metabolic Pathway Analysis

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Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Muller, Jurgen Zanghellini

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Which sets of elementary flux modes form thermodynamically feasible flux distributions?

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Neil Swainston, Kieran Smallbone, Hooman Hefzi, Paul D. Dobson, Dobson Pd, Judy Brewer, Michael Hanscho, Daniel C. Zielinski, Kok Siong Ang, Zielinski Dc, Natalie J. Gardiner

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, Jahir M. Gutierrez, Ang Ks, Gardiner Nj, Sarantos Kyriakopoulos and 19 other authors

Recon 2.2: from reconstruction to model of human metabolism.

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Hooman Hefzi, Kok Siong Ang, Michael Hanscho, Aarash Bordbar, David Ruckerbauer, Meiyappan Lakshmanan, Camila A. Orellana, Deniz Baycin-Hizal, Yingxiang Huang, Daniel Ley, Veronica S. Martinez, Sarantos Kyriakopoulos, Natalia E. Jiménez, Daniel C. Zielinski, Lake-Ee Quek and 25 other authors

A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism

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2015 Govind Nair, Christian Jungreuthmayer, Michael Hanscho, Jürgen Zanghellini

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Designing minimal microbial strains of desired functionality using a genetic algorithm

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David E. Ruckerbauer, Christian Jungreuthmayer, Jürgen Zanghellini

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Predicting genetic engineering targets with Elementary Flux Mode Analysis: a review of four current methods

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Matthias P. Gerstl, Steffen Klamt, Christian Jungreuthmayer, Jürgen Zanghellini

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Exact quantification of cellular robustness in genome-scale metabolic networks

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Jürgen Zanghellini

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ICT: isotope correction toolbox.

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Christian Jungreuthmayer, David E. Ruckerbauer, Matthias P. Gerstl, Michael Hanscho, Jürgen Zanghellini

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Avoiding the Enumeration of Infeasible Elementary Flux Modes by Including Transcriptional Regulatory Rules in the Enumeration Process Saves Computational Costs

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Matthias P. Gerstl, David E. Ruckerbauer, Diethard Mattanovich, Christian Jungreuthmayer, Jürgen Zanghellini

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Metabolomics integrated elementary flux mode analysis in large metabolic networks

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Albert Casanovas, Richard R. Sprenger, Kirill Tarasov, David E. Ruckerbauer, Hans Kristian Hannibal-Bach, Jürgen Zanghellini

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, Ole N. Jensen, Christer S. Ejsing

Quantitative Analysis of Proteome and Lipidome Dynamics Reveals Functional Regulation of Global Lipid Metabolism

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Matthias P. Gerstl, Christian Jungreuthmayer, Jürgen Zanghellini

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tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks

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2014 David E. Ruckerbauer, Christian Jungreuthmayer, Jürgen Zanghellini

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Design of Optimally Constructed Metabolic Networks of Minimal Functionality

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2013 Christian Jungreuthmayer, Marie Beurton-Aimar, Jürgen Zanghellini

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Fast Computation of Minimal Cut Sets in Metabolic Networks with a Berge Algorithm That Utilizes Binary Bit Pattern Trees

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Christian Jungreuthmayer, David E. Ruckerbauer, Jürgen Zanghellini

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regEfmtool: Speeding up elementary flux mode calculation using transcriptional regulatory rules in the form of three-state logic

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Jürgen Zanghellini

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, David E. Ruckerbauer, Michael Hanscho, Christian Jungreuthmayer

Elementary flux modes in a nutshell: Properties, calculation and applications

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C. Jungreuthmayer, M. Sonnleitner, G. Striedner, J. Mairhofer, J. Zanghellini

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Designing an optimally ethanol producing E. coli strain using constrained minimal cut sets

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Trevor Garnett, Vanessa Conn, Simon Conn, Darren Plett, Juergen Zanghellini

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, Nenah MacKenzie, Akiko Enju, Karen Francis, Luke Holtham, Ute Roessner, Berin Boughton, Antony Bacic, Neil Shirley, Antoni Rafalski, Kanwarpal Dhugga and 2 other authors

The response of the maize nitrate transport system to nitrogen demand and supply across the lifecycle

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Christian Jungreuthmayer, Govind Nair, Steffen Klamt, Jürgen Zanghellini

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Comparison and improvement of algorithms for computing minimal cut sets

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