Thomas D. Schneider

All papers authored by Thomas D. Schneider

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2020 Kevin S. Franco, Zhe Sun, Yixiong Chen, Cedric Cagliero, Yuhong Zuo, Yan Ning Zhou, Mikhail Kashlev, Ding Jun Jin, Thomas D. Schneider

Escherichia coli σ38 promoters use two UP elements instead of a −35 element: resolution of a paradox and discovery that σ38 transcribes ribosomal promoters

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2019 Zhe Sun

, Cedric Cagliero, Jerome Izard, Yixiong Chen, Yan Ning Zhou, William F. Heinz, Thomas D. Schneider

, Ding Jun Jin

Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coli

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2018 Katherine J. Fenstermacher

, Vasudevan Achuthan, Thomas D. Schneider

, Jeffrey J. DeStefano

An Evolutionary/Biochemical Connection between Promoter- and Primer-Dependent Polymerases Revealed by Systematic Evolution of Ligands by Exponential Enrichment

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2016 Zhong Qian, Andrei Trostel, Dale E. A. Lewis, Sang Jun Lee, Ximiao He, Anne M. Stringer, Joseph T. Wade, Thomas D. Schneider

, Tim Durfee, Sankar Adhya

Genome-Wide Transcriptional Regulation and Chromosome Structural Arrangement by GalR in E. coli

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2015 Kristen M. Pluchino, Dominic Esposito

, Janna K. Moen, Matthew D. Hall, James P. Madigan, Suneet Shukla, Lauren V. Procter, Vanessa E. Wall, Thomas D. Schneider

, Ian Pringle, Suresh V. Ambudkar, Deborah R. Gill, Steven C. Hyde, Michael M. Gottesman

Identification of a Cryptic Bacterial Promoter in Mouse (mdr1a) P-Glycoprotein cDNA

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2012 Hong Lou, Hongchuan Li, Meredith Yeager, Kate Im, Bert Gold, Thomas D. Schneider

, Joseph F. Fraumeni, Stephen J. Chanock, Stephen K. Anderson, Michael Dean

Promoter variants in the MSMB gene associated with prostate cancer regulate MSMB/NCOA4 fusion transcripts

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Jae-Ho Jeong, Hyun-Ju Kim, Kun-Hee Kim, Minsang Shin, Yeongjin Hong, Joon Haeng Rhee, Thomas D. Schneider

, Hyon E. Choy

An unusual feature associated with LEE1 P1 promoters in enteropathogenic Escherichia coli (EPEC)

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2010 Thomas D. Schneider

A brief review of molecular information theory

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Thomas D. Schneider

70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergence

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2008 Matthew R. Hemm, Brian J. Paul, Thomas D. Schneider

, Gisela Storz, Kenneth E. Rudd

Small membrane proteins found by comparative genomics and ribosome binding site models

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Ilya G. Lyakhov, Annangarachari Krishnamachari, Thomas D. Schneider

Discovery of novel tumor suppressor p53 response elements using information theory

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Hiroki Inui, Kyu-Seon Oh, Carine Nadem, Takahiro Ueda, Sikandar G. Khan, Ahmet Metin, Engin Gozukara, Steffen Emmert, Hanoch Slor, David B. Busch, Carl C. Baker, John J. DiGiovanna, Deborah Tamura, Cornelia S. Seitz, Alexei Gratchev and 7 other authors

Xeroderma Pigmentosum-Variant Patients from America, Europe, and Asia

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2007 Zehua Chen, Karen A. Lewis, Ryan K. Shultzaberger, Ilya G. Lyakhov, Ming Zheng, Bernard Doan, Gisela Storz, Thomas D. Schneider

Discovery of Fur binding site clusters in Escherichia coli by information theory models

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Ryan K. Shultzaberger, Lindsey R. Roberts, Ilya G. Lyakhov, Igor A. Sidorov

, Andrew G. Stephen, Robert J. Fisher, Thomas D. Schneider

Correlation between binding rate constants and individual information of E. coli Fis binding sites

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2006 Ryan K. Shultzaberger, Zehua Chen, Karen A. Lewis, Thomas D. Schneider

Anatomy of Escherichia coli σ 70 promoters

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Eckart Bindewald, Thomas D. Schneider

, Bruce A. Shapiro

CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments

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Zehua Chen, Thomas D. Schneider

Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands

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2005 Zehua Chen, Thomas D. Schneider

Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases

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2003 Ilya G. Lyakhov, Lisa E. Stewart, Thomas D. Schneider

, Paul N. Hengen

Molecular flip–flops formed by overlapping Fis sites

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2002 Vanessa Muniz-Medina, Tala Shahlavi, Sikandar G. Khan, Takahiro Ueda, Carl C. Baker, Thomas D. Schneider

, Hiroki Inui, Kenneth H. Kraemer, Steffen Emmert

The human XPC DNA repair gene: arrangement, splice site information content and influence of a single nucleotide polymorphism in a splice acceptor site on alternative splicing and function

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All papers authored by Thomas D. Schneider