All papers authored by Sameer Velankar
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Matthew Thakur 
,
Annalisa Buniello ,
Catherine Brooksbank,
Kim T. Gurwitz,
Matthew Hall,
Matthew Hartley,
David G. Hulcoop,
Andrew R. Leach,
Diana Marques ,
Maria Martin,
Aziz Mithani,
Ellen M. McDonagh ,
Euphemia Mutasa-Gottgens,
David Ochoa ,
Yasset Perez-Riverol
and 6 other authors
,
Annalisa Buniello ,
Catherine Brooksbank,
Kim T. Gurwitz,
Matthew Hall,
Matthew Hartley,
David G. Hulcoop,
Andrew R. Leach,
Diana Marques ,
Maria Martin,
Aziz Mithani,
Ellen M. McDonagh ,
Euphemia Mutasa-Gottgens,
David Ochoa ,
Yasset Perez-Riverol
and 6 other authors
EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023
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Jon Agirre ,
Mihaela Atanasova ,
Haroldas Bagdonas ,
Charles B. Ballard,
Arnaud Baslé,
James Beilsten-Edmands ,
Rafael J. Borges ,
David G. Brown,
J. Javier Burgos-Mármol ,
John M. Berrisford,
Paul S. Bond ,
Iracema Caballero ,
Lucrezia Catapano ,
Grzegorz Chojnowski ,
Atlanta G. Cook
and 79 other authors
,
Mihaela Atanasova ,
Haroldas Bagdonas ,
Charles B. Ballard,
Arnaud Baslé,
James Beilsten-Edmands ,
Rafael J. Borges ,
David G. Brown,
J. Javier Burgos-Mármol ,
John M. Berrisford,
Paul S. Bond ,
Iracema Caballero ,
Lucrezia Catapano ,
Grzegorz Chojnowski ,
Atlanta G. Cook
and 79 other authors
The CCP4 suite: integrative software for macromolecular crystallography
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Nicola Bordin ,
Ian Sillitoe,
Vamsi Nallapareddy,
Vaishali P. Waman,
Clemens Rauer,
Su Datt Lam ,
Lam Sd,
Sen N.,
Waman Vp,
Neeladri Sen ,
Michael Heinzinger ,
Maria Littmann,
Stephanie Kim,
Sameer Velankar ,
Martin Steinegger
and 2 other authors
,
Ian Sillitoe,
Vamsi Nallapareddy,
Vaishali P. Waman,
Clemens Rauer,
Su Datt Lam ,
Lam Sd,
Sen N.,
Waman Vp,
Neeladri Sen ,
Michael Heinzinger ,
Maria Littmann,
Stephanie Kim,
Sameer Velankar ,
Martin Steinegger
and 2 other authors
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
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2022
Matthew Thakur ,
Alex Bateman ,
Cath Brooksbank,
Mallory Freeberg ,
Melissa Harrison,
Matthew Hartley,
Thomas Keane ,
Gerard Kleywegt,
Andrew Leach ,
Mariia Levchenko ,
Sarah Morgan,
Ellen M. McDonagh ,
Sandra Orchard ,
Irene Papatheodorou ,
Sameer Velankar
and 4 other authors
,
Alex Bateman ,
Cath Brooksbank,
Mallory Freeberg ,
Melissa Harrison,
Matthew Hartley,
Thomas Keane ,
Gerard Kleywegt,
Andrew Leach ,
Mariia Levchenko ,
Sarah Morgan,
Ellen M. McDonagh ,
Sandra Orchard ,
Irene Papatheodorou ,
Sameer Velankar
and 4 other authors
EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2022
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Mehmet Akdel,
Douglas E. V. Pires,
Eduard Porta Pardo,
Jürgen Jänes ,
Arthur O. Zalevsky ,
Bálint Mészáros,
Patrick Bryant ,
Lydia L. Good ,
Roman A. Laskowski ,
Gabriele Pozzati ,
Aditi Shenoy ,
Wensi Zhu,
Petras Kundrotas,
Victoria Ruiz Serra ,
Carlos H. M. Rodrigues
and 19 other authors
,
Arthur O. Zalevsky ,
Bálint Mészáros,
Patrick Bryant ,
Lydia L. Good ,
Roman A. Laskowski ,
Gabriele Pozzati ,
Aditi Shenoy ,
Wensi Zhu,
Petras Kundrotas,
Victoria Ruiz Serra ,
Carlos H. M. Rodrigues
and 19 other authors
A structural biology community assessment of AlphaFold2 applications
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Mihaly Varadi ,
Andrew Mark Waterhouse,
Augustin Žídek ,
Sreenath Nair ,
Ian Sillitoe ,
Gerardo Tauriello ,
Stephen Anyango ,
Stefan Bienert ,
Clemente Borges ,
Maarten L. Hekkelman ,
Mandar Deshpande ,
Robbie Joosten ,
Tim Green ,
John Jumper ,
Agata Laydon
and 18 other authors
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,
Andrew Mark Waterhouse,
Augustin Žídek ,
Sreenath Nair ,
Ian Sillitoe ,
Gerardo Tauriello ,
Stephen Anyango ,
Stefan Bienert ,
Clemente Borges ,
Maarten L. Hekkelman ,
Mandar Deshpande ,
Robbie Joosten ,
Tim Green ,
John Jumper ,
Agata Laydon
and 18 other authors
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2021
Mihaly Varadi ,
Stephen Anyango ,
Mandar Deshpande ,
Sreenath Nair ,
Cindy Natassia,
Galabina Yordanova,
David Yuan,
Oana Stroe,
Gemma Wood,
Agata Laydon,
Augustin Žídek,
Tim Green,
Kathryn Tunyasuvunakool,
Stig Petersen,
John Jumper
and 12 other authors
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,
Stephen Anyango ,
Mandar Deshpande ,
Sreenath Nair ,
Cindy Natassia,
Galabina Yordanova,
David Yuan,
Oana Stroe,
Gemma Wood,
Agata Laydon,
Augustin Žídek,
Tim Green,
Kathryn Tunyasuvunakool,
Stig Petersen,
John Jumper
and 12 other authors
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Glen van Ginkel,
Lukáš Pravda,
José M. Dana,
Mihaly Varadi,
Peter Keller,
Stephen Anyango ,
Sameer Velankar
,
Sameer Velankar
PDBeCIF: an open-source mmCIF/CIF parsing and processing package
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Sreenath Nair ,
Mihály Váradi,
Nurul Nadzirin,
Lukáš Pravda ,
Stephen Anyango ,
Saqib Mir,
John Berrisford,
David Armstrong,
Aleksandras Gutmanas,
Sameer Velankar
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,
Mihály Váradi,
Nurul Nadzirin,
Lukáš Pravda ,
Stephen Anyango ,
Saqib Mir,
John Berrisford,
David Armstrong,
Aleksandras Gutmanas,
Sameer Velankar
Download from academic.oup.com
David Sehnal ,
Sebastian Bittrich ,
Mandar Deshpande ,
Radka Svobodová ,
Karel Berka ,
Václav Bazgier ,
Sameer Velankar ,
Stephen K. Burley ,
Jaroslav Koča ,
Alexander S. Rose
,
Sebastian Bittrich ,
Mandar Deshpande ,
Radka Svobodová ,
Karel Berka ,
Václav Bazgier ,
Sameer Velankar ,
Stephen K. Burley ,
Jaroslav Koča ,
Alexander S. Rose
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
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Zukang Feng ,
John D. Westbrook ,
Raul Sala ,
Oliver S. Smart ,
Gérard Bricogne,
Masaaki Matsubara ,
Issaku Yamada ,
Shinichiro Tsuchiya,
Kiyoko F. Aoki-Kinoshita,
Jeffrey C. Hoch,
Genji Kurisu ,
Sameer Velankar ,
Stephen K. Burley,
Jasmine Y. Young
,
John D. Westbrook ,
Raul Sala ,
Oliver S. Smart ,
Gérard Bricogne,
Masaaki Matsubara ,
Issaku Yamada ,
Shinichiro Tsuchiya,
Kiyoko F. Aoki-Kinoshita,
Jeffrey C. Hoch,
Genji Kurisu ,
Sameer Velankar ,
Stephen K. Burley,
Jasmine Y. Young
Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank
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2019
Paul D. Adams ,
Pavel V. Afonine ,
Kumaran Baskaran ,
Helen M. Berman,
John Berrisford,
Gerard Bricogne,
David G. Brown ,
Stephen K. Burley ,
Minyu Chen,
Zukang Feng ,
Claus Flensburg,
Aleksandras Gutmanas,
Jeffrey C. Hoch,
Yasuyo Ikegawa,
Yumiko Kengaku
and 20 other authors
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,
Pavel V. Afonine ,
Kumaran Baskaran ,
Helen M. Berman,
John Berrisford,
Gerard Bricogne,
David G. Brown ,
Stephen K. Burley ,
Minyu Chen,
Zukang Feng ,
Claus Flensburg,
Aleksandras Gutmanas,
Jeffrey C. Hoch,
Yasuyo Ikegawa,
Yumiko Kengaku
and 20 other authors
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2017
David Sehnal ,
Mandar Deshpande ,
Radka Svobodová Vařeková,
Saqib Mir ,
Karel Berka ,
Adam Midlik ,
Lukáš Pravda ,
Sameer Velankar ,
Jaroslav Koča
,
Mandar Deshpande ,
Radka Svobodová Vařeková,
Saqib Mir ,
Karel Berka ,
Adam Midlik ,
Lukáš Pravda ,
Sameer Velankar ,
Jaroslav Koča
LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data
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