Simone Sidoli - Dissemin

Papers authored by Simone Sidoli

This paper is made freely available by the publisher.

2016 Natarajan V. Bhanu, Simone Sidoli

, Benjamin A. Garcia

Histone modification profiling reveals differential signatures associated with human embryonic stem cell self-renewal and differentiation

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Lissa C. Anderson, Kelly R. Karch, Scott A. Ugrin, Mariel Coradin, A. Michelle English, A. Michelle English, Simone Sidoli

, Jeffrey Shabanowitz, Benjamin A. Garcia, Donald F. Hunt

Analyses of Histone Proteoforms Using Front-End Electron Transfer Dissociation-Enabled Orbitrap Instruments

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This paper is available in a repository.

Simone Sidoli

, Julien Vandamme, Anna Elisabetta Salcini, Ole N. Jensen

Dynamic changes of histone H3 marks during Caenorhabditis elegans lifecycle revealed by middle-down proteomics

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Simone Sidoli

, Rina Fujiwara, Katarzyna Kulej, Benjamin A. Garcia

Differential quantification of isobaric phosphopeptides using data-independent acquisition mass spectrometry

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Kelly R. Karch, Simone Sidoli

, Benjamin A. Garcia

Identification and Quantification of Histone PTMs Using High-Resolution Mass Spectrometry

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2015 Simone Sidoli

, Johayra Simithy, Kelly R. Karch, Katarzyna Kulej, Benjamin A. Garcia

Low Resolution Data-Independent Acquisition in an LTQ-Orbitrap Allows for Simplified and Fully Untargeted Analysis of Histone Modifications

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Kirsty Jamieson

, Elizabeth T. Wiles, Kevin J. McNaught, Simone Sidoli

, Neena Leggett, Yanchun Shao, Benjamin A. Garcia, Eric U. Selker

Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin

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Julien Vandamme, Simone Sidoli

, Luca Mariani, Carsten Friis, Jesper Christensen, Kristian Helin, Ole N. Jensen, Anna Elisabetta Salcini

H3K23me2 is a new heterochromatic mark inCaenorhabditis elegans

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Xudong Wu, Ida Holst Bekker-Jensen, Jesper Christensen, Kasper Dindler Rasmussen, Simone Sidoli

, Yan Qi, Yu Kong, Xi Wang, Yajuan Cui, Zhijian Xiao, Guogang Xu, Kristine Williams

, Juri Rappsilber, Casper Kaae Sønderby, Ole Winther and 2 other authors

Tumor suppressor ASXL1 is essential for the activation of INK4B expression in response to oncogene activity and anti-proliferative signals

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Shoudeng Chen, Ze Yang, Alex W. Wilkinson, Aniruddha J. Deshpande, Simone Sidoli

, Krzysztof Krajewski, Brian D. Strahl, Benjamin A. Garcia, Scott A. Armstrong, Dinshaw J. Patel, Or Gozani

The PZP Domain of AF10 Senses Unmodified H3K27 to Regulate DOT1L-Mediated Methylation of H3K79

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Andrey Tvardovskiy, Krzysztof Wrzesinski, Simone Sidoli

, Stephen J. Fey, Adelina Rogowska-Wrzesinska, Ole N. Jensen

Top-down and Middle-down Protein Analysis Reveals that Intact and Clipped Human Histones Differ in Post-translational Modification Patterns

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Özlem Önder, Simone Sidoli

, Martin Carroll, Benjamin A. Garcia

Progress in epigenetic histone modification analysis by mass spectrometry for clinical investigations

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Katarzyna Kulej, Simone Sidoli

, Giuseppe Palmisano, Alistair V. G. Edwards, Phillip J. Robinson

, Martin R. Larsen

Optimization of calmodulin-affinity chromatography for brain and organelles

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This paper was not found in any repository, but could be made available legally by the author.

Simone Sidoli

, Benjamin A. Garcia

Properly reading the histone code by MS-based proteomics

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Marco Milioli, Maria Ibáñez-Vea, Simone Sidoli

, Giuseppe Palmisano, Maria Careri

, Martin R. Larsen

Quantitative proteomics analysis of platelet-derived microparticles reveals distinct protein signatures when stimulated by different physiological agonists

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Simone Sidoli

, Zuo-Fei Yuan, Shu Lin, Kelly Karch, Xiaoshi Wang, Natarajan Bhanu, Anna M. Arnaudo, Laura-Mae Britton, Xing-Jun Cao, Michelle Gonzales-Cope, Yumiao Han, Shichong Liu, Rosalynn C. Molden, Samuel Wein, Leila Afjehi-Sadat and 1 other authors

Drawbacks in the use of unconventional hydrophobic anhydrides for histone derivatization in bottom-up proteomics PTM analysis

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Kyoung-Jae Won, Inchan Choi, Gary LeRoy, Barry M. Zee, Simone Sidoli

, Michelle Gonzales-Cope, Benjamin A. Garcia

Proteogenomics analysis reveals specific genomic orientations of distal regulatory regions composed by non-canonical histone variants

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Zuo-Fei Yuan, Shu Lin, Rosalynn C. Molden, Xing-Jun Cao, Natarajan V. Bhanu, Xiaoshi Wang, Simone Sidoli

, Shichong Liu, Benjamin A. Garcia

EpiProfile Quantifies Histone Peptides With Modifications by Extracting Retention Time and Intensity in High-resolution Mass Spectra

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Constance Alabert, Teresa K. Barth, Nazaret Reverón-Gómez, Simone Sidoli

, Andreas Schmidt, Ole N. Jensen, Axel Imhof, Anja Groth

Two distinct modes for propagation of histone PTMs across the cell cycle

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Simone Sidoli

, Shu Lin, Kelly R. Karch, Benjamin A. Garcia

Bottom-Up and Middle-Down Proteomics Have Comparable Accuracies in Defining Histone Post-Translational Modification Relative Abundance and Stoichiometry

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Papers authored by Simone Sidoli