All papers authored by John Lees
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2024
Juri Kuronen,
Samuel T. Horsfield 
,
Anna K. Pöntinen ,
Sudaraka Mallawaarachchi ,
Sergio Arredondo-Alonso ,
Harry Thorpe ,
Rebecca A. Gladstone ,
Rob J. L. Willems ,
Stephen D. Bentley ,
Nicholas J. Croucher ,
Johan Pensar ,
John A. Lees ,
Gerry Tonkin-Hill ,
Jukka Corander
,
Anna K. Pöntinen ,
Sudaraka Mallawaarachchi ,
Sergio Arredondo-Alonso ,
Harry Thorpe ,
Rebecca A. Gladstone ,
Rob J. L. Willems ,
Stephen D. Bentley ,
Nicholas J. Croucher ,
Johan Pensar ,
John A. Lees ,
Gerry Tonkin-Hill ,
Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
Download from doi.org
Ouli Xie ,
Jacqueline M. Morris ,
Andrew J. Hayes ,
Rebecca J. Towers,
Magnus G. Jespersen ,
John A. Lees ,
Nouri L. Ben Zakour ,
Olga Berking,
Sarah L. Baines ,
Glen P. Carter ,
Gerry Tonkin-Hill,
Layla Schrieber,
Liam McIntyre,
Jake A. Lacey ,
Taylah B. James
and 17 other authors
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,
Jacqueline M. Morris ,
Andrew J. Hayes ,
Rebecca J. Towers,
Magnus G. Jespersen ,
John A. Lees ,
Nouri L. Ben Zakour ,
Olga Berking,
Sarah L. Baines ,
Glen P. Carter ,
Gerry Tonkin-Hill,
Layla Schrieber,
Liam McIntyre,
Jake A. Lacey ,
Taylah B. James
and 17 other authors
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2022
Philip Hc Kremer ,
Bart Ferwerda,
Hester J. Bootsma,
Nienke Y. Rots,
Alienke J. Wijmenga-Monsuur ,
Elisabeth Am Sanders,
Krzysztof Trzciński,
Anne L. Wyllie ,
Paul Turner ,
Arie van der Ende,
Matthijs C. Brouwer,
Stephen D. Bentley,
Diederik van de Beek,
John A. Lees
,
Bart Ferwerda,
Hester J. Bootsma,
Nienke Y. Rots,
Alienke J. Wijmenga-Monsuur ,
Elisabeth Am Sanders,
Krzysztof Trzciński,
Anne L. Wyllie ,
Paul Turner ,
Arie van der Ende,
Matthijs C. Brouwer,
Stephen D. Bentley,
Diederik van de Beek,
John A. Lees
Pneumococcal genetic variability in age-dependent bacterial carriage
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Emily J. Stevens ,
Daniel J. Morse ,
Dora Bonini,
Seána Duggan ,
Tarcisio Brignoli ,
Mario Recker ,
John A. Lees ,
Nicholas J. Croucher,
Stephen Bentley,
Daniel J. Wilson ,
Sarah G. Earle ,
Robert Dixon,
Angela Nobbs ,
Howard Jenkinson ,
Tim van Opijnen
and 6 other authors
,
Daniel J. Morse ,
Dora Bonini,
Seána Duggan ,
Tarcisio Brignoli ,
Mario Recker ,
John A. Lees ,
Nicholas J. Croucher,
Stephen Bentley,
Daniel J. Wilson ,
Sarah G. Earle ,
Robert Dixon,
Angela Nobbs ,
Howard Jenkinson ,
Tim van Opijnen
and 6 other authors
Targeted control of pneumolysin production by a mobile genetic element in Streptococcus pneumoniae
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2021
Edward S. Knock ,
Lilith K. Whittles ,
John A. Lees ,
Pablo N. Perez-Guzman ,
Robert Verity ,
Richard G. FitzJohn ,
Katy A. M. Gaythorpe ,
Natsuko Imai ,
Wes Hinsley ,
Lucy C. Okell ,
Alicia Rosello ,
Nikolas Kantas,
Caroline E. Walters ,
Sangeeta Bhatia ,
Oliver J. Watson
and 16 other authors
,
Lilith K. Whittles ,
John A. Lees ,
Pablo N. Perez-Guzman ,
Robert Verity ,
Richard G. FitzJohn ,
Katy A. M. Gaythorpe ,
Natsuko Imai ,
Wes Hinsley ,
Lucy C. Okell ,
Alicia Rosello ,
Nikolas Kantas,
Caroline E. Walters ,
Sangeeta Bhatia ,
Oliver J. Watson
and 16 other authors
Key epidemiological drivers and impact of interventions in the 2020 SARS-CoV-2 epidemic in England
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Ruth McCabe ,
Mara D. Kont ,
Nora Schmit ,
Charles Whittaker ,
Alessandra Løchen ,
Marc Baguelin ,
Edward Knock ,
Lilith K. Whittles ,
John Lees ,
Nicholas F. Brazeau ,
Patrick Gt Walker ,
Azra C. Ghani ,
Neil M. Ferguson ,
Peter J. White ,
Christl A. Donnelly
and 2 other authors
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,
Mara D. Kont ,
Nora Schmit ,
Charles Whittaker ,
Alessandra Løchen ,
Marc Baguelin ,
Edward Knock ,
Lilith K. Whittles ,
John Lees ,
Nicholas F. Brazeau ,
Patrick Gt Walker ,
Azra C. Ghani ,
Neil M. Ferguson ,
Peter J. White ,
Christl A. Donnelly
and 2 other authors
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Anna K. Pöntinen ,
Janetta Top ,
Sergio Arredondo-Alonso ,
Gerry Tonkin-Hill,
Ana R. Freitas ,
Carla Novais,
Rebecca A. Gladstone,
Maiju Pesonen ,
Rodrigo Meneses ,
Henri Pesonen,
John A. Lees ,
Dorota Jamrozy ,
Stephen D. Bentley ,
Val F. Lanza,
Carmen Torres
and 6 other authors
,
Janetta Top ,
Sergio Arredondo-Alonso ,
Gerry Tonkin-Hill,
Ana R. Freitas ,
Carla Novais,
Rebecca A. Gladstone,
Maiju Pesonen ,
Rodrigo Meneses ,
Henri Pesonen,
John A. Lees ,
Dorota Jamrozy ,
Stephen D. Bentley ,
Val F. Lanza,
Carmen Torres
and 6 other authors
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era
Download from www.nature.com
Pierre Nouvellet ,
Sangeeta Bhatia ,
Anne Cori,
Kylie E. C. Ainslie ,
Marc Baguelin,
Samir Bhatt ,
Adhiratha Boonyasiri ,
Nicholas F. Brazeau,
Lorenzo Cattarino ,
Laura V. Cooper,
Helen Coupland,
Zulma M. Cucunuba ,
Gina Cuomo-Dannenburg ,
Amy Dighe,
Bimandra A. Djaafara
and 36 other authors
,
Sangeeta Bhatia ,
Anne Cori,
Kylie E. C. Ainslie ,
Marc Baguelin,
Samir Bhatt ,
Adhiratha Boonyasiri ,
Nicholas F. Brazeau,
Lorenzo Cattarino ,
Laura V. Cooper,
Helen Coupland,
Zulma M. Cucunuba ,
Gina Cuomo-Dannenburg ,
Amy Dighe,
Bimandra A. Djaafara
and 36 other authors
Reduction in mobility and COVID-19 transmission
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2020
H. Juliette T. Unwin ,
H. Juliette T. Unwin,
Juliette Unwin,
Swapnil Mishra ,
Valerie C. Bradley,
Axel Gandy,
Thomas A. Mellan,
Helen Coupland,
Jonathan Ish-Horowicz,
Michaela A. C. Vollmer,
Charles Whittaker ,
Sarah L. Filippi,
Xiaoyue Xi,
Mélodie Monod,
Oliver Ratmann
and 41 other authors
,
H. Juliette T. Unwin,
Juliette Unwin,
Swapnil Mishra ,
Valerie C. Bradley,
Axel Gandy,
Thomas A. Mellan,
Helen Coupland,
Jonathan Ish-Horowicz,
Michaela A. C. Vollmer,
Charles Whittaker ,
Sarah L. Filippi,
Xiaoyue Xi,
Mélodie Monod,
Oliver Ratmann
and 41 other authors
State-level tracking of COVID-19 in the United States
Download from www.nature.com
2019
Johan Pensar ,
Santeri Puranen,
Brian Arnold,
Neil MacAlasdair,
Juri Kuronen,
Gerry Tonkin-Hill ,
Maiju Pesonen,
Yingying Xu,
Aleksi Sipola ,
Leonor Sánchez-Busó ,
John A. Lees ,
Claire Chewapreecha,
Stephen D. Bentley,
Simon R. Harris,
Julian Parkhill
and 2 other authors
,
Santeri Puranen,
Brian Arnold,
Neil MacAlasdair,
Juri Kuronen,
Gerry Tonkin-Hill ,
Maiju Pesonen,
Yingying Xu,
Aleksi Sipola ,
Leonor Sánchez-Busó ,
John A. Lees ,
Claire Chewapreecha,
Stephen D. Bentley,
Simon R. Harris,
Julian Parkhill
and 2 other authors
Genome-wide epistasis and co-selection study using mutual information
Download from academic.oup.com
2018
John A. Lees ,
Bart Ferwerda ,
Philip Hc C. Kremer,
Mercedes Valls Serón,
Nicole E. Wheeler,
Mercedes Valls Serón,
Nicholas J. Croucher ,
Rebecca A. Gladstone,
Hester J. Bootsma,
Nynke Y. Rots,
Alienke J. Wijmega-Monsuur,
Elisabeth Am M. Sanders,
Lees Ja,
Krzysztof Trzciński,
Anne L. Wyllie
and 47 other authors
,
Bart Ferwerda ,
Philip Hc C. Kremer,
Mercedes Valls Serón,
Nicole E. Wheeler,
Mercedes Valls Serón,
Nicholas J. Croucher ,
Rebecca A. Gladstone,
Hester J. Bootsma,
Nynke Y. Rots,
Alienke J. Wijmega-Monsuur,
Elisabeth Am M. Sanders,
Lees Ja,
Krzysztof Trzciński,
Anne L. Wyllie
and 47 other authors
Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
Download from www.nature.com
2017
John A. Lees ,
Matthijs Brouwer ,
Arie van der Ende,
Julian Parkhill ,
Diederik van de Beek ,
Stephen D. Bentley
Download from iai.asm.org
,
Matthijs Brouwer ,
Arie van der Ende,
Julian Parkhill ,
Diederik van de Beek ,
Stephen D. Bentley
Download from iai.asm.org
2016
John Lees ,
Lees Ja,
Philip H. C. Kremer,
Kremer Phc,
Kremer Ph,
Manso As,
Ana S. Manso,
Nicholas J. Croucher,
Croucher Nj,
Bart Ferwerda ,
Serón Mv,
Mercedes Valls Serón,
Oggioni Mr,
Marco R. Oggioni,
Julian Parkhill
and 6 other authors
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,
Lees Ja,
Philip H. C. Kremer,
Kremer Phc,
Kremer Ph,
Manso As,
Ana S. Manso,
Nicholas J. Croucher,
Croucher Nj,
Bart Ferwerda ,
Serón Mv,
Mercedes Valls Serón,
Oggioni Mr,
Marco R. Oggioni,
Julian Parkhill
and 6 other authors
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