All papers authored by Karel Berka
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2023
Anna Špačková 
,
Ondřej Vávra,
Tomáš Raček ,
Václav Bazgier ,
David Sehnal ,
Jiří Damborský ,
Radka Svobodová ,
David Bednář ,
Karel Berka
,
Ondřej Vávra,
Tomáš Raček ,
Václav Bazgier ,
David Sehnal ,
Jiří Damborský ,
Radka Svobodová ,
David Bednář ,
Karel Berka
ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era
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Jan Chasák,
Lauren Oorts ,
Milan Dak ,
Veronika Šlachtová ,
Václav Bazgier ,
Karel Berka ,
Linda De Vooght,
Natalia Smiejkowska ,
Kevin Van Calster,
Laurence Van Moll,
Davie Cappoen ,
Paul Cos ,
Lucie Brulíková
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,
Milan Dak ,
Veronika Šlachtová ,
Václav Bazgier ,
Karel Berka ,
Linda De Vooght,
Natalia Smiejkowska ,
Kevin Van Calster,
Laurence Van Moll,
Davie Cappoen ,
Paul Cos ,
Lucie Brulíková
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Aliaksei Chareshneu,
Adam Midlik ,
Crina-Maria Ionescu,
Alexander Rose,
Vladimír Horský ,
Alessio Cantara,
Radka Svobodová ,
Karel Berka ,
David Sehnal
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,
Crina-Maria Ionescu,
Alexander Rose,
Vladimír Horský ,
Alessio Cantara,
Radka Svobodová ,
Karel Berka ,
David Sehnal
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Ondřej Schindler ,
Karel Berka ,
Alessio Cantara ,
Aleš Křenek ,
Dominik Tichý ,
Tomáš Raček ,
Radka Svobodová
,
Karel Berka ,
Alessio Cantara ,
Aleš Křenek ,
Dominik Tichý ,
Tomáš Raček ,
Radka Svobodová
αCharges: partial atomic charges for AlphaFold structures in high quality
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Mark N. Wass,
Dandan Xue,
Daniel Zaidman,
Wim Vranken,
Sameer Velankar,
Mandar Deshpande,
Nurul Nadzirin,
Sreenath S. Nair,
Lukas Pravda,
Ahsan Tanweer,
Jiri Damborsky,
Alessia David,
Juan Fernandez Recio,
Jose Maria Carazo,
Sucharita Dey
and 60 other authors
PDBe-KB: collaboratively defining the biological context of structural data
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Adam Midlik ,
Ivana Hutařová Vařeková,
Jan Hutař,
Aliaksei Chareshneu,
Karel Berka ,
Radka Svobodová
,
Ivana Hutařová Vařeková,
Jan Hutař,
Aliaksei Chareshneu,
Karel Berka ,
Radka Svobodová
OverProt: secondary structure consensus for protein families
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Wim Vranken,
Mark Wass,
Sameer Velankar,
Lukas Pravda,
Luca Parca,
Typhaine Paysan-Lafosse,
Leandro Radusky,
Antonio Ribeiro,
Luis Serrano,
Ian Sillitoe,
Mihaly Varadi,
Gulzar Singh,
Petr Skoda,
Radka Svobodova,
Jonathan Tyzack
and 42 other authors
PDBe-KB: a community-driven resource for structural and functional annotations
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Ondřej Schindler,
Tomáš Raček,
Aleksandra Maršavelski,
Jaroslav Koča,
Karel Berka ,
Radka Svobodová
,
Radka Svobodová
Correction to: Optimized SQE atomic charges for peptides accessible via a web application
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