Sigrid C. J. De Keersmaecker

All papers authored by Sigrid C. J. De Keersmaecker

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2023 Carine Laurence Yehouenou, Bert Bogaerts

, Kevin Vanneste, Sigrid C. J. De Keersmaecker

, Nancy H. C. Roosens

, Arsène A. Kpangon

, Dissou Affolabi, Anne Simon, Francis Moise Dossou, Olivia Dalleur

Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin

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Sarah J. D. Nauwelaerts, Nina Van Goethem

, Koen De Cremer

, Natalia Bustos Sierra, Jordy Vercauteren, Christophe Stroobants

, Alfred Bernard, Tim Nawrot, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker

Noninvasive integrative approach applied to children in the context of recent air pollution exposure demonstrates association between fractional exhaled nitric oxide (FeNO) and urinary CC16

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2022 Florence E. Buytaers

, Bavo Verhaegen

, Mathieu Gand

, Jolien D’aes, Kevin Vanneste, Nancy H. C. Roosens

, Kathleen Marchal

, Sarah Denayer, Sigrid C. J. De Keersmaecker

Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study

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Sarah J. D. Nauwelaerts, Koen De Cremer, Natalia Bustos Sierra

, Mathieu Gand

, Dirk Van Geel, Maud Delvoye, Els Vandermassen, Jordy Vercauteren, Christophe Stroobants, Alfred Bernard

, Nelly D. Saenen, Tim S. Nawrot, Nancy H. C. Roosens

, Sigrid C. J. De Keersmaecker

Assessment of the Feasibility of a Future Integrated Larger-Scale Epidemiological Study to Evaluate Health Risks of Air Pollution Episodes in Children

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2021 Laura A. E. Van Poelvoorde

, Mathieu Gand

, Marie-Alice Fraiture, Sigrid C. J. De Keersmaecker

, Bavo Verhaegen, Koenraad Van Hoorde, Ann Brigitte Cay, Nadège Balmelle, Philippe Herman

, Nancy Roosens

Strategy to Develop and Evaluate a Multiplex RT-ddPCR in Response to SARS-CoV-2 Genomic Evolution

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Bert Bogaerts

, Raf Winand

, Julien Van Braekel, Stefan Hoffman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker

, Kathleen Marchal

, Kevin Vanneste

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

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Laura A. E. Van Poelvoorde

, Bert Bogaerts

, Qiang Fu, Sigrid C. J. De Keersmaecker

, Isabelle Thomas, Nina Van Goethem

, Steven Van Gucht, Raf Winand

, Xavier Saelens

, Nancy Roosens, Kevin Vanneste

Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance

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Mathieu Gand

, Kevin Vanneste, Isabelle Thomas, Steven Van Gucht, Arnaud Capron, Philippe Herman, Nancy H. C. Roosens

, Sigrid C. J. De Keersmaecker

Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants

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Florence E. Buytaers

, Assia Saltykova, Wesley Mattheus

, Bavo Verhaegen, Nancy H. C. Roosens

, Kevin Vanneste, Valeska Laisnez, Naïma Hammami

, Brigitte Pochet, Vera Cantaert, Kathleen Marchal

, Sarah Denayer, Sigrid C. J. De Keersmaecker

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

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Bert Bogaerts, Raf Winand

, Julien Van Braekel, Wesley Mattheus, Sigrid C. J. De Keersmaecker

, Nancy H. C. Roosens

, Kathleen Marchal

, Kevin Vanneste, Pieter-Jan Ceyssens

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation

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Bert Bogaerts

, Stéphanie Nouws, Bavo Verhaegen, Sarah Denayer, Julien Van Braekel, Raf Winand

, Qiang Fu, Florence Crombé

, Denis Piérard

, Kathleen Marchal, Nancy H. C. Roosens

, Sigrid C. J. De Keersmaecker

, Kevin Vanneste

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

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2020 Thomas Delcourt, Kevin Vanneste, Mohamed Rida Soumali, Wim Coucke

, Vanessa Ghislain, Aline Hebrant, Els Van Valckenborgh, Sigrid C. J. De Keersmaecker

, Nancy H. Roosens

, Philippe Van De Walle, Marc Van Den Bulcke, Aline Antoniou

NGS for (Hemato-) Oncology in Belgium: Evaluation of Laboratory Performance and Feasibility of a National External Quality Assessment Program

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Bas Berbers, Pieter-Jan Ceyssens

, Pierre Bogaerts, Kevin Vanneste, Nancy H. C. Roosens

, Kathleen Marchal, Sigrid C. J. De Keersmaecker

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination

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Assia Saltykova, Florence E. Buytaers

, Sarah Denayer, Bavo Verhaegen, Denis Piérard

, Nancy H. C. Roosens

, Kathleen Marchal, Sigrid C. J. De Keersmaecker

, Sigrid C. J. De Keersmaecker

Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way Towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study

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Sarah J. D. Nauwelaerts, Nancy H. C. Roosens

, Koen De Cremer, Alfred Bernard

, Sigrid C. J. De Keersmaecker

Gender‐dependent association between exhaled nitric oxide and the CC16 38AA genotype in young school children

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Florence E. Buytaers

, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens

, Denis Piérard

, Kathleen Marchal, Sigrid C. J. De Keersmaecker

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine

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Mathieu Gand

, Kevin Vanneste, Isabelle Thomas, Steven Van Gucht, Arnaud Capron, Philippe Herman, Nancy H. C. Roosens

, Sigrid C. J. De Keersmaecker

Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection

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Stéphanie Nouws, Bert Bogaerts

, Bavo Verhaegen, Sarah Denayer, Florence Crombé, Klara De Rauw

, Denis Piérard

, Kathleen Marchal, Kevin Vanneste, Nancy H. C. Roosens

, Sigrid C. J. De Keersmaecker

The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country

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Marie-Alice Fraiture, Bert Bogaerts, Raf Winand, Marie Deckers, Nina Papazova, Kevin Vanneste, Sigrid C. J. De Keersmaecker

, Nancy H. C. Roosens

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing

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Bas Berbers, Assia Saltykova, Cristina Garcia-Graells, Patrick Philipp, Fabrice Arella, Kathleen Marchal

, Raf Winand, Kevin Vanneste, Nancy H. C. Roosens

, Sigrid C. J. De Keersmaecker

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

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All papers authored by Sigrid C. J. De Keersmaecker