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Papers authored by Lennart Martens

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2009 Florian Reisinger, Lennart Martens

ORCID

Database on Demand - An online tool for the custom generation of FASTA-formatted sequence databases

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Juan Antonio Vizcaíno

ORCID

, Richard Côté, Florian Reisinger, Jm Foster, Joseph M. Foster, Michael Mueller, Jonathan Rameseder, Henning Hermjakob, Lennart Martens

ORCID

A guide to the Proteomics Identifications Database proteomics data repository

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Young Hye Kim, Katrin Marcus, Lea Tenenholz Grinberg, Heike Goehler, Jens Wiltfang

ORCID

, Christian Stephan, Martin Eisenacher, Tanja Hardt, Lennart Martens

ORCID

, Michael J. Dunn, Young Mok Park, Helmut E. Meyer

Toward a Successful Clinical Neuroproteomics The 11th HUPO Brain Proteome Project Workshop 3 March, 2009, Kolymbari, Greece

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Harald Barsnes, Steffen Huber, Albert Sickmann, Ingvar Eidhammer, Lennart Martens

ORCID

OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results

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Harald Barsnes, Juan Antonio Vizcaíno

ORCID

, Ingvar Eidhammer, Lennart Martens

ORCID

PRIDE Converter: making proteomics data-sharing easy

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Alexander W. Bell, Eric W. Deutsch

ORCID

, Catherine E. Au, Robert E. Kearney, Ron Beavis, Salvatore Sechi, Tommy Nilsson, John J. M. Bergeron, Thomas A. Beardslee, Thomas Chappell, Gavin Meredith, Peter Sheffield, Phillip Gray, Mahbod Hajivandi, Marshall Pope and 87 other authors

A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

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Martin Eisenacher, Lennart Martens

ORCID

, Tanja Hardt, Michael Kohl, Harald Barsnes, Kenny Helsens, Jari Häkkinen, Fredrik Levander, Ruedi Aebersold, Joel Vandekerckhove, Michael J. Dunn, Michael J. Dunn, Frederique Lisacek, Jennifer A. Siepen, Simon J. Hubbard and 7 other authors

Getting a grip on proteomics data : Proteomics Data Collection (ProDaC)

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Lennart Martens

ORCID

, Rolf Apweiler

Algorithms and Databases

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Martin Eisenacher, Lennart Martens

ORCID

, Harald Barsnes, Tanja Hardt, Michael Kohl, Jari Häkkinen, Rolf Apweiler, Helmut E. Meyer, Christian Stephan

Proteomics Data Collection - 5th ProDaC Workshop : 4 March 2009, Kolympari, Crete, Greece

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Niklaas Colaert, Kenny Helsens, Lennart Martens

ORCID

, Joël Vandekerckhove, Kris Gevaert

ORCID

Improved visualization of protein consensus sequences by iceLogo

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2008 Juan Antonio Vizcaíno

ORCID

, Michael Mueller, Henning Hermjakob, Lennart Martens

ORCID

Charting online OMICS resources: A navigational chart for clinical researchers

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Kenny Helsens, Evy Timmerman, Joël Vandekerckhove, Kris Gevaert

ORCID

, Lennart Martens

ORCID

Peptizer, a Tool for Assessing False Positive Peptide Identifications and Manually Validating Selected Results

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Ravi Tharakan, Lennart Martens

ORCID

, Jennifer E. Van Eyk, David R. Graham

OMSSAGUI: An open-source user interface component to configure and run the OMSSA search engine

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Richard G. Côté, Philip Jones, Lennart Martens

ORCID

, Rolf Apweiler, Henning Hermjakob

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries

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Sandra Orchard, Lennart Martens

ORCID

, Joshua Tasman, Pierre-Alain Binz

ORCID

, Juan Pablo Albar, Henning Hermjakob

6th HUPO Annual World Congress – Proteomics Standards Initiative Workshop 6–10 October 2007, Seoul, Korea

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Michael Mueller, Juan Antonio Vizcaíno

ORCID

, Philip Jones, Richard Côté, David Thorneycroft, Rolf Apweiler, Henning Hermjakob, Lennart Martens

ORCID

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets

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Lennart Martens

ORCID

, Phil Jones, Richard Côté

Using the Proteomics Identifications Database (PRIDE)

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J. van Eyk, Suresh Mathivanan, Mukhtar Ahmed, Erik Bj�rling, Natalie G. Ahn, Hainard Alexandre, Ramars Amanchy

ORCID

, Philip C. Andrews, Joel S. Bader, Anuradha Nali, Brian M. Balgley, Marcus Bantscheff, Keiryn L. Bennett, Erik Bjorling, Blagoy Blagoev and 168 other authors

Human Proteinpedia enables sharing of human protein data

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Michael Hamacher, Martin Eisenacher, Florian Tribl, Christian Stephan, Katrin Marcus, Tanja Hardt, Jens Wiltfang

ORCID

, Lennart Martens

ORCID

, Dominic Desiderio, Howard Gutstein, Young Mok Park, Helmut E. Meyer

The HUPO Brain Proteome project wish list--summary of the 9(th) HUPO BPP Workshop 9-10 January 2008, Barbados

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Lennart Martens

ORCID

, Luisa Montecchi Palazzi, Henning Hermjakob

Data Standards and Controlled Vocabularies for Proteomics

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