All papers authored by Oliver Pybus
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Evangelos A. Dimopoulos ,
Ophélie Lebrasseur ,
Louis du Plessis ,
Bram Vrancken ,
Sophy Charlton ,
Ashleigh F. Haruda ,
Kristina Tabbada,
Patrik G. Flammer,
Stefan Dascalu ,
Nemanja Marković ,
Hannah Li ,
Gabrielle Franklin ,
Robert Symmons,
Henriette Baron
and 22 other authors
Ancient chicken remains reveal the origins of virulence in Marek’s disease virus
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Louis Du Plessis,
Thomas P. Peacock,
Dinesh Aggarwal,
Rachel Colquhoun ,
Alesandro M. Carabelli ,
Nicholas Ellaby,
Eileen Gallagher,
Natalie Groves,
Ben Jackson ,
J. T. McCrone ,
Áine O’Toole ,
Anna Price,
Theo Sanderson,
Emily Scher
and 14 other authors
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK
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Sarah C. Hill ,
David M. Aanensen ,
Thomas R. Connor,
Oliver G. Pybus
Download from www.nature.com
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Alison L. Hill,
Louis du Plessis ,
Kris Varun Parag ,
Oliver George Pybus
A computationally tractable birth-death model that combines phylogenetic and epidemiological data
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Zhe Liu,
Qianfang Guo,
Lirong Zou,
Huan Zhang,
Meng Zhang,
Fangzhu Ouyang,
Juan Su,
Wenzhe Su
and 31 other authors
Download from doi.org
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Daniel Gyamfi Amoako ,
Houriiyah Tegally,
Cathrine Scheepers,
Christian L. Althaus ,
Ugochukwu J. Anyaneji,
Phillip A. Bester,
Dr. Christian L. Althaus Pd,
Maciej F. Boni ,
Mohammed Chand,
Wonderful T. Choga,
Rachel Colquhoun,
Michaela Davids,
Koen Deforche
and 86 other authors
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
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Christopher Ruis ,
Sumali Bajaj ,
Oliver G. Pybus ,
Moritz U. G. Kraemer
Progress and challenges in virus genomic epidemiology
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Maciej F. Boni,
Matthew J. Bull ,
Amy Colleran,
Rachel M. Colquhoun ,
Alistair C. Darby ,
Sam Haldenby,
Verity Hill,
Anita Lucaci,
John T. McCrone,
Samuel M. Nicholls ,
Áine O’Toole,
Nicole Pacchiarini ,
Radoslaw Poplawski ,
Emily Scher
and 9 other authors
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic
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Chadi M. Saad-Roy ,
Sinead E. Morris ,
Rachel E. Baker ,
Michael J. Mina ,
Jeremy Farrar ,
Edward C. Holmes ,
Oliver G. Pybus ,
Andrea L. Graham ,
Ezekiel J. Emanuel ,
Simon A. Levin ,
C. Jessica E. Metcalf ,
Bryan T. Grenfell
Vaccine nationalism and the dynamics and control of SARS-CoV-2
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Louis du Plessis,
Emily Scher ,
Anthony Underwood,
Ben Jackson ,
Verity Hill ,
John T. McCrone,
Rachel Colquhoun ,
Chris Ruis,
Khalil Abu-Dahab,
Ben Taylor,
Corin Yeats ,
Daniel Maloney,
Nathan Medd ,
Stephen W. Attwood
and 4 other authors
Assignment of Epidemiological Lineages in an Emerging Pandemic Using the Pangolin Tool
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Mark D. Perkins,
Jens H. Kuhn,
Mark J. Pallen ,
Erik J. Alm,
Brett N. Archer,
Amal Barakat,
Trevor Bedford,
Jinal N. Bhiman,
Leon Caly ,
Lisa L. Carter,
Anne Cullinane,
Tulio de Oliveira ,
Julian Druce,
Ihab El Masry
and 32 other authors
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
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Sully Márquez,
Belén Prado-Vivar,
Mónica Becerra-Wong,
Juan José Guadalupe,
Darlan Da Silva Candido,
Juan Carlos Fernandez-Cadena,
Gabriel Morey-Leon,
Rubén Armas-Gonzalez,
Derly Madeleiny Andrade-Molina,
Alfredo Bruno,
Domenica De Mora,
Maritza Olmedo,
Denisse Portugal,
Manuel Gonzalez
and 23 other authors
Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador
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Thomas A. Mellan ,
Charles Whittaker ,
Ingra M. Claro ,
Darlan da S. Candido ,
Swapnil Mishra ,
Myuki A. E. Crispim ,
Flavia C. S. Sales ,
Iwona Hawryluk ,
John T. McCrone ,
Ruben J. G. Hulswit ,
Lucas A. M. Franco ,
Mariana S. Ramundo ,
Jaqueline G. de Jesus ,
Pamela S. Andrade
and 57 other authors
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
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Sinead E. Morris ,
C. Jessica E. Metcalf ,
Michael J. Mina ,
Rachel E. Baker ,
Jeremy Farrar ,
Edward C. Holmes ,
Oliver G. Pybus ,
Andrea L. Graham ,
Simon A. Levin ,
Bryan T. Grenfell ,
Caroline E. Wagner
Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes
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Bram Vrancken ,
Sophie Gryseels,
Ine Boonen,
Antonios Fikatas,
Yiqiao Li ,
Anne Laudisoit,
Sebastian Lequime,
Josef Bryja,
Rhodes Makundi,
Yonas Meheretu ,
Benjamin Dudu Akaibe,
Sylvestre Gambalemoke Mbalitini,
Frederik Van de Perre,
Natalie Van Houtte
and 9 other authors
Molecular detection and genomic characterization of diverse hepaciviruses in African rodents
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Carlos A. Prete ,
Claudia M. M. Abrahim ,
Alfredo Mendrone ,
Tassila Salomon ,
Cesar de Almeida-Neto ,
Rafael F. O. França ,
Maria C. Belotti ,
Maria P. S. S. Carvalho ,
Allyson G. Costa ,
Myuki A. E. Crispim ,
Suzete C. Ferreira ,
Nelson A. Fraiji,
Susie Gurzenda ,
Charles Whittaker
and 21 other authors
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John T. McCrone ,
Verity Hill ,
Áine O’Toole,
Robert Johnson ,
Anna Price ,
Samuel M. Nicholls ,
Ana da Silva Filipe ,
Sara M. Rey ,
Joel Southgate ,
Rachel M. Colquhoun ,
James Shepherd ,
David Jorgensen ,
Consortium Cog Uk,
Rajiv Shah
and 562 other authors
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity
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Lewis Fletcher Buss,
Darlan da Silva Candido,
Darlan da Silva Candido,
Jean-Paul Carrera ,
Sabrina Li,
Alexander E. Zarebski ,
Rafael Henrique Moraes Pereira ,
Carlos A. Prete ,
Andreza Aruska de Souza-Santos ,
Kris V. Parag ,
Maria Carolina T. D. Belotti ,
Maria F. Vincenti-Gonzalez,
Janey Messina ,
Flavia Cristina da Silva Sales
and 28 other authors
Epidemiological and clinical characteristics of the COVID-19 epidemic in Brazil
Download from www.nature.com
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Wei Gu ,
Scot Federman ,
Louis du Plessis ,
Oliver G. Pybus ,
Nuno R. Faria ,
Candace Wang,
Guixia Yu ,
Brian Bushnell ,
Chao-Yang Pan,
Hugo Guevara,
Alicia Sotomayor-Gonzalez ,
Kelsey Zorn ,
Allan Gopez,
Venice Servellita
and 35 other authors
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California
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