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Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
Download from doi.orgDetecting co-selection through excess linkage disequilibrium in bacterial genomes
Download from doi.orgAnalysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
Download from doi.orgGenomic epidemiology of penicillin-non-susceptible Streptococcus pneumoniae
Download from doi.orgOn the evolutionary ecology of multidrug resistance in bacteria
Download from doi.orgPANINI: Pangenome Neighbour Identification for Bacterial Populations
Download from doi.orgPredicting evolution using frequency-dependent selection in bacterial populations
UploadBayesian inference of ancestral dates on bacterial phylogenetic trees
Download from doi.orgSuperDCA for genome-wide epistasis analysis
Download from doi.orgJoint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
Download from www.nature.comEasy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.
Download from doi.orgTransformation Asymmetry and the Evolution of the Bacterial Accessory Genome
Download from academic.oup.comPhase-variable methylation and epigenetic regulation by type I restriction–modification systems
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