All papers authored by Nicholas Croucher
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James E. Truscott ,
Nicholas J. Croucher
Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
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Joshua C. D’Aeth ,
Nicholas J. Croucher
Genomic epidemiology of penicillin-non-susceptible Streptococcus pneumoniae
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Stephanie W. Lo,
John A. Lees,
Nicholas J. Croucher ,
Andries J. van Tonder,
Jukka Corander,
Andrew J. Page,
Pekka Marttinen,
Leon J. Bentley,
Theresa J. Ochoa,
Pak Leung Ho,
Mignon du Plessis,
Jennifer E. Cornick,
Brenda Kwambana-Adams,
Rachel Benisty
and 13 other authors
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Christophe Fraser,
John Lees
On the evolutionary ecology of multidrug resistance in bacteria
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Nicholas J. Croucher ,
Jukka Corander
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Jukka Corander,
David M. Aanensen
PANINI: Pangenome Neighbour Identification for Bacterial Populations
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Laura Hammitt,
Raymond Reid,
Mathuram Santosham,
Robert Weatherholtz,
Stephen Bentley,
Katherine O’Brien,
Marc Lipsitch,
William Hanage
Predicting evolution using frequency-dependent selection in bacterial populations
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Nicholas J. Croucher ,
Stephen D. Bentley,
Simon R. Harris,
Daniel J. Wilson
Bayesian inference of ancestral dates on bacterial phylogenetic trees
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Jukka Corander
SuperDCA for genome-wide epistasis analysis
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Bart Ferwerda ,
Philip Hc C. Kremer,
Mercedes Valls Serón,
Nicole E. Wheeler,
Mercedes Valls Serón,
Nicholas J. Croucher ,
Rebecca A. Gladstone,
Hester J. Bootsma,
Nynke Y. Rots,
Alienke J. Wijmega-Monsuur,
Elisabeth Am M. Sanders,
Lees Ja,
Krzysztof Trzciński,
Anne L. Wyllie
and 47 other authors
Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
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Margreet Bakker,
Nicholas J. Croucher ,
Daniela Bezemer,
Matthew Hall,
Swee Hoe Ong,
Mariska Hillebregt,
Croucher Nj,
Oliver Ratmann,
Katrien Fransen,
M. Kate Grabowski,
Jan Albert
and 21 other authors
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.
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Transformation Asymmetry and the Evolution of the Bacterial Accessory Genome
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Paul Turner,
Andrea Tate,
Tim Le,
Jozelyn Pablo,
Chris Hung,
Andy Teng,
William P. Hanage,
Marc Lipsitch,
David Goldblatt,
Mark Alderson,
Xiaowu Liang
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Marco R. Oggioni
Phase-variable methylation and epigenetic regulation by type I restriction–modification systems
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Fredrick M. Mobegi ,
Christa van der Gaast-De Jongh,
Michelle van Weert,
Fred J. van Opzeeland,
Minna Vehkala,
Mirjam J. Knol,
Hester J. Bootsma,
Niko Välimäki,
Niko Valimaki,
Nicholas J. Croucher ,
Jacques F. Meis,
Stephen Bentley,
Sacha A. F. T. van Hijum,
Jukka Corander
and 3 other authors
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Nicola De Maio,
Claire Chewapreecha,
Susannah J. Salter,
Paul Turner,
David M. Aanensen,
Stephen D. Bentley,
Xavier Didelot,
Christophe Fraser
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Richard J. Goater,
Khalil Abudahab,
David M. Aanensen,
Simon R. Harris
Phandango: an interactive viewer for bacterial population genomics.
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