All papers authored by Philippe Lemey
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2024
Oscar Cortés Azuero 
,
Oscar Cortes-Azuero,
Noémie Lefrancq ,
Birgit Nikolay ,
Clifton McKee ,
Julien Cappelle ,
Vibol Hul ,
Tey Putita Ou ,
Thavry Hoem ,
Philippe Lemey ,
Mohammed Ziaur Rahman ,
Ausraful Islam ,
Emily S. Gurley ,
Veasna Duong ,
Henrik Salje
,
Oscar Cortes-Azuero,
Noémie Lefrancq ,
Birgit Nikolay ,
Clifton McKee ,
Julien Cappelle ,
Vibol Hul ,
Tey Putita Ou ,
Thavry Hoem ,
Philippe Lemey ,
Mohammed Ziaur Rahman ,
Ausraful Islam ,
Emily S. Gurley ,
Veasna Duong ,
Henrik Salje
The Genetic Diversity of Nipah Virus Across Spatial Scales
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Barney I. Potter,
Marijn Thijssen,
Nídia Sequeira Trovão ,
Andrea Pineda-Peña,
Marijke Reynders,
Thomas Mina,
Carolina Alvarez,
Samad Amini-Bavil-Olyaee,
Frederik Nevens,
Piet Maes ,
Philippe Lemey ,
Marc Van Ranst,
Guy Baele ,
Mahmoud Reza Pourkarim
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Andrea Pineda-Peña,
Marijke Reynders,
Thomas Mina,
Carolina Alvarez,
Samad Amini-Bavil-Olyaee,
Frederik Nevens,
Piet Maes ,
Philippe Lemey ,
Marc Van Ranst,
Guy Baele ,
Mahmoud Reza Pourkarim
Contemporary and historical human migration patterns shape hepatitis B virus diversity
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2023
Dillon S. McBride ,
Sofya K. Garushyants,
John Franks,
Andrew F. Magee,
Steven H. Overend,
Devra Huey,
Amanda M. Williams,
Seth A. Faith,
Ahmed Kandeil ,
Sanja Trifkovic ,
Lance Miller,
Trushar Jeevan,
Anami Patel,
Jacqueline M. Nolting ,
Michael J. Tonkovich
and 14 other authors
,
Sofya K. Garushyants,
John Franks,
Andrew F. Magee,
Steven H. Overend,
Devra Huey,
Amanda M. Williams,
Seth A. Faith,
Ahmed Kandeil ,
Sanja Trifkovic ,
Lance Miller,
Trushar Jeevan,
Anami Patel,
Jacqueline M. Nolting ,
Michael J. Tonkovich
and 14 other authors
Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer
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Thomas S. Postler ,
Martin Beer ,
Bradley J. Blitvich ,
Jens Bukh ,
Xavier de Lamballerie ,
J. Felix Drexler ,
Allison Imrie ,
Amit Kapoor ,
Galina G. Karganova ,
Philippe Lemey ,
Volker Lohmann ,
Peter Simmonds ,
Donald B. Smith ,
Jack T. Stapleton ,
Jens H. Kuhn
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,
Martin Beer ,
Bradley J. Blitvich ,
Jens Bukh ,
Xavier de Lamballerie ,
J. Felix Drexler ,
Allison Imrie ,
Amit Kapoor ,
Galina G. Karganova ,
Philippe Lemey ,
Volker Lohmann ,
Peter Simmonds ,
Donald B. Smith ,
Jack T. Stapleton ,
Jens H. Kuhn
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2022
Sapna Sharma ,
Thomas Vercruysse ,
Lorena Sanchez-Felipe ,
Winnie Kerstens ,
Madina Rasulova ,
Lindsey Bervoets,
Carolien De Keyzer,
Rana Abdelnabi ,
Caroline S. Foo ,
Viktor Lemmens ,
Dominique Van Looveren ,
Piet Maes ,
Guy Baele ,
Birgit Weynand,
Philippe Lemey
and 3 other authors
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,
Thomas Vercruysse ,
Lorena Sanchez-Felipe ,
Winnie Kerstens ,
Madina Rasulova ,
Lindsey Bervoets,
Carolien De Keyzer,
Rana Abdelnabi ,
Caroline S. Foo ,
Viktor Lemmens ,
Dominique Van Looveren ,
Piet Maes ,
Guy Baele ,
Birgit Weynand,
Philippe Lemey
and 3 other authors
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Andrea Brizzi ,
Charles Whittaker ,
Luciana M. S. Servo,
Iwona Hawryluk ,
Carlos A. Prete,
William M. de Souza ,
Renato S. Aguiar,
Leonardo J. T. Araujo ,
Leonardo S. Bastos ,
Alexandra Blenkinsop ,
Lewis F. Buss,
Darlan Candido,
Marcia C. Castro ,
Silvia F. Costa ,
Julio Croda
and 26 other authors
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,
Charles Whittaker ,
Luciana M. S. Servo,
Iwona Hawryluk ,
Carlos A. Prete,
William M. de Souza ,
Renato S. Aguiar,
Leonardo J. T. Araujo ,
Leonardo S. Bastos ,
Alexandra Blenkinsop ,
Lewis F. Buss,
Darlan Candido,
Marcia C. Castro ,
Silvia F. Costa ,
Julio Croda
and 26 other authors
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Phuoc Truong Nguyen,
Phuoc Truong Nguyen ,
Ravi Kant ,
Frederik Van den Broeck ,
Maija T. Suvanto ,
Hussein Alburkat ,
Jenni Virtanen ,
Ella Ahvenainen ,
Robert Castren,
Samuel L. Hong ,
Guy Baele ,
Maarit J. Ahava ,
Hanna Jarva,
Suvi Tuulia Jokiranta ,
Hannimari Kallio-Kokko
and 13 other authors
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Ravi Kant ,
Frederik Van den Broeck ,
Maija T. Suvanto ,
Hussein Alburkat ,
Jenni Virtanen ,
Ella Ahvenainen ,
Robert Castren,
Samuel L. Hong ,
Guy Baele ,
Maarit J. Ahava ,
Hanna Jarva,
Suvi Tuulia Jokiranta ,
Hannimari Kallio-Kokko
and 13 other authors
The phylodynamics of SARS-CoV-2 during 2020 in Finland
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Andrea Brizzi ,
Charles Whittaker ,
Luciana M. S. Servo,
Iwona Hawryluk ,
Carlos A. Prete,
William M. de Souza ,
Renato S. Aguiar,
Leonardo J. T. Araujo ,
Leonardo S. Bastos ,
Alexandra Blenkinsop ,
Lewis F. Buss,
Darlan Candido,
Marcia C. Castro ,
Silvia F. Costa ,
Julio Croda
and 26 other authors
,
Charles Whittaker ,
Luciana M. S. Servo,
Iwona Hawryluk ,
Carlos A. Prete,
William M. de Souza ,
Renato S. Aguiar,
Leonardo J. T. Araujo ,
Leonardo S. Bastos ,
Alexandra Blenkinsop ,
Lewis F. Buss,
Darlan Candido,
Marcia C. Castro ,
Silvia F. Costa ,
Julio Croda
and 26 other authors
Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals
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Franziska Hufsky ,
Denis Beslic ,
Dimitri Boeckaerts ,
Sebastian Duchene ,
Enrique González-Tortuero ,
Andreas J. Gruber ,
Jiarong Guo ,
Daan Jansen ,
John Juma ,
Kunaphas Kongkitimanon ,
Antoni Luque ,
Muriel Ritsch,
Gabriel Lencioni Lovate ,
Luca Nishimura ,
Célia Pas
and 11 other authors
,
Denis Beslic ,
Dimitri Boeckaerts ,
Sebastian Duchene ,
Enrique González-Tortuero ,
Andreas J. Gruber ,
Jiarong Guo ,
Daan Jansen ,
John Juma ,
Kunaphas Kongkitimanon ,
Antoni Luque ,
Muriel Ritsch,
Gabriel Lencioni Lovate ,
Luca Nishimura ,
Célia Pas
and 11 other authors
The International Virus Bioinformatics Meeting 2022
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Noémie Lefrancq ,
Valérie Bouchez ,
Nadia Fernandes ,
Alex-Mikael Barkoff,
Thijs Bosch,
Tine Dalby ,
Thomas Åkerlund ,
Jessica Darenberg ,
Katerina Fabianova ,
Didrik F. Vestrheim,
Norman K. Fry ,
Juan José González-López ,
Karolina Gullsby ,
Adele Habington ,
Qiushui He
and 16 other authors
,
Valérie Bouchez ,
Nadia Fernandes ,
Alex-Mikael Barkoff,
Thijs Bosch,
Tine Dalby ,
Thomas Åkerlund ,
Jessica Darenberg ,
Katerina Fabianova ,
Didrik F. Vestrheim,
Norman K. Fry ,
Juan José González-López ,
Karolina Gullsby ,
Adele Habington ,
Qiushui He
and 16 other authors
Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis
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2021
Philippe Lemey ,
Nick Ruktanonchai,
Samuel L. Hong ,
Vittoria Colizza ,
Chiara Poletto ,
Frederik Van den Broeck,
Mandev S. Gill,
Xiang Ji ,
Anthony Levasseur,
Bas B. Oude Munnink ,
Marion Koopmans,
Adam Sadilek ,
Shengjie Lai ,
Andrew J. Tatem ,
Guy Baele
and 2 other authors
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Nick Ruktanonchai,
Samuel L. Hong ,
Vittoria Colizza ,
Chiara Poletto ,
Frederik Van den Broeck,
Mandev S. Gill,
Xiang Ji ,
Anthony Levasseur,
Bas B. Oude Munnink ,
Marion Koopmans,
Adam Sadilek ,
Shengjie Lai ,
Andrew J. Tatem ,
Guy Baele
and 2 other authors
Untangling introductions and persistence in COVID-19 resurgence in Europe
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Nuno R. Faria ,
Thomas A. Mellan ,
Charles Whittaker ,
Ingra M. Claro ,
Darlan da S. Candido ,
Swapnil Mishra ,
Myuki A. E. Crispim ,
Flavia C. S. Sales ,
Iwona Hawryluk ,
John T. McCrone ,
Ruben J. G. Hulswit ,
Lucas A. M. Franco ,
Mariana S. Ramundo ,
Jaqueline G. de Jesus ,
Pamela S. Andrade
and 57 other authors
,
Thomas A. Mellan ,
Charles Whittaker ,
Ingra M. Claro ,
Darlan da S. Candido ,
Swapnil Mishra ,
Myuki A. E. Crispim ,
Flavia C. S. Sales ,
Iwona Hawryluk ,
John T. McCrone ,
Ruben J. G. Hulswit ,
Lucas A. M. Franco ,
Mariana S. Ramundo ,
Jaqueline G. de Jesus ,
Pamela S. Andrade
and 57 other authors
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
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Magda Bletsa ,
Bram Vrancken ,
Sophie Gryseels,
Ine Boonen,
Antonios Fikatas,
Yiqiao Li ,
Anne Laudisoit,
Sebastian Lequime,
Josef Bryja,
Rhodes Makundi,
Yonas Meheretu ,
Benjamin Dudu Akaibe,
Sylvestre Gambalemoke Mbalitini,
Frederik Van de Perre,
Natalie Van Houtte
and 9 other authors
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Bram Vrancken ,
Sophie Gryseels,
Ine Boonen,
Antonios Fikatas,
Yiqiao Li ,
Anne Laudisoit,
Sebastian Lequime,
Josef Bryja,
Rhodes Makundi,
Yonas Meheretu ,
Benjamin Dudu Akaibe,
Sylvestre Gambalemoke Mbalitini,
Frederik Van de Perre,
Natalie Van Houtte
and 9 other authors
Molecular detection and genomic characterization of diverse hepaciviruses in African rodents
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2020
Philippe Lemey ,
Samuel L. Hong ,
Verity Hill ,
Guy Baele,
Chiara Poletto,
Vittoria Colizza ,
Áine O’Toole ,
John T. McCrone,
Kristian G. Andersen,
Michael Worobey,
Martha I. Nelson,
Andrew Rambaut ,
Marc A. Suchard
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,
Samuel L. Hong ,
Verity Hill ,
Guy Baele,
Chiara Poletto,
Vittoria Colizza ,
Áine O’Toole ,
John T. McCrone,
Kristian G. Andersen,
Michael Worobey,
Martha I. Nelson,
Andrew Rambaut ,
Marc A. Suchard
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Kaat Ramaekers ,
Annabel Rector ,
Lize Cuypers ,
Philippe Lemey ,
Els Keyaerts ,
Marc Van Ranst
,
Annabel Rector ,
Lize Cuypers ,
Philippe Lemey ,
Els Keyaerts ,
Marc Van Ranst
Towards a unified classification for human respiratory syncytial virus genotypes
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Ariane Düx ,
Sebastian Lequime ,
Livia Victoria Patrono ,
Bram Vrancken ,
Sengül Boral,
Jan F. Gogarten ,
Antonia Hilbig ,
David Horst ,
Kevin Merkel,
Baptiste Prepoint ,
Sabine Santibanez,
Jasmin Schlotterbeck ,
Marc A. Suchard ,
Markus Ulrich,
Navena Widulin
and 6 other authors
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Sebastian Lequime ,
Livia Victoria Patrono ,
Bram Vrancken ,
Sengül Boral,
Jan F. Gogarten ,
Antonia Hilbig ,
David Horst ,
Kevin Merkel,
Baptiste Prepoint ,
Sabine Santibanez,
Jasmin Schlotterbeck ,
Marc A. Suchard ,
Markus Ulrich,
Navena Widulin
and 6 other authors
Measles virus and rinderpest virus divergence dated to the sixth century BCE
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2019
Nuno R. Faria ,
Nicole Vidal ,
José Lourenco ,
Jayna Raghwani ,
Kim C. E. Sigaloff,
Andy J. Tatem ,
David A. M. van de Vijver,
Andrea-Clemencia Pineda-Peña ,
Rebecca Rose,
Carole L. Wallis,
Steve Ahuka-Mundeke,
Jean-Jacques Muyembe-Tamfum,
Jérémie Muwonga ,
Marc A. Suchard ,
Tobias F. Rinke de Wit
and 7 other authors
,
Nicole Vidal ,
José Lourenco ,
Jayna Raghwani ,
Kim C. E. Sigaloff,
Andy J. Tatem ,
David A. M. van de Vijver,
Andrea-Clemencia Pineda-Peña ,
Rebecca Rose,
Carole L. Wallis,
Steve Ahuka-Mundeke,
Jean-Jacques Muyembe-Tamfum,
Jérémie Muwonga ,
Marc A. Suchard ,
Tobias F. Rinke de Wit
and 7 other authors
Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa
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Dieudonné Buh Kum ,
Niraj Mishra ,
Bram Vrancken ,
Hendrik Jan Thibaut ,
Annelies Wilder-Smith ,
Philippe Lemey ,
Johan Neyts ,
Kai Dallmeier
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Niraj Mishra ,
Bram Vrancken ,
Hendrik Jan Thibaut ,
Annelies Wilder-Smith ,
Philippe Lemey ,
Johan Neyts ,
Kai Dallmeier
Limited evolution of the yellow fever virus 17d in a mouse infection model
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