Rolf Backofen - Dissemin

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Papers authored by Rolf Backofen

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2015 Cass Sd, Haas Ka, B. Stoll, Alkhnbashi Os, K. Sharma, H. Urlaub, R. Backofen

ORCID

, A. Marchfelder, Bolt El

The role of Cas8 in type I CRISPR interference.

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2014 Maier Lk, Lisa-Katharina Maier, Aris-Edda Stachler, Stachler Ae, Sita J. Saunders, Saunders Sj, Rolf Backofen

ORCID

, Anita Marchfelder

An Active Immune Defense with a Minimal CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) RNA and without the Cas6 Protein*

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Christina Otto, Mathias Möhl, Steffen Heyne, Mika Amit, Landau Gm, Gad M. Landau, Rolf Backofen

ORCID

, Sebastian Will

ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs

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Malte Krönig, Max Walter, Vanessa Drendel, Martin Werner, Jilg Ca, Richter As, Cordula A. Jilg, Andreas S. Richter

ORCID

, Rolf Backofen

ORCID

, David McGarry, Wolfgang Schultze-Seemann, Marie Follo, Roland Schüle

Cell type specific gene expression analysis of prostate needle biopsies resolves tumor tissue heterogeneity

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Ralf Gilsbach, Sebastian Preissl, Grüning Ba, Björn A. Grüning, Tilman Schnick, Lukas Burger, Vladimir Benes, Andreas Würch, Ulrike Bönisch, Stefan Günther, Rolf Backofen

ORCID

, Fleischmann Bk, Bernd K. Fleischmann, Dirk Schübeler, Lutz Hein

Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease

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Kousik Kundu, Martin Mann, Fabrizio Costa, Rolf Backofen

ORCID

MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions

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Dietrich Rebholz-Schuhmann

ORCID

, Christoph Grabmüller, Silvestras Kavaliauskas, Samuel Croset, Peter Woollard, Rolf Backofen

ORCID

, Wendy Filsell, Dominic Clark

A case study: semantic integration of gene–disease associations for type 2 diabetes mellitus from literature and biomedical data resources

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Markus Bredel, Ajay K. Yadav, Roberto Ferrarese, Griffith R. Harsh, Harsh Gr, Eva Bug, Yadav Ak, Daniel Maticzka, Irene L. Y. Yu, Wilfried Reichardt, Anie P. Masilamani, Fangping Dai, Hyunsoo Kim, Astrid Weyerbrock, Masilamani Ap and 20 other authors

Aberrant splicing of a brain-enriched alternative exon eliminates tumor suppressor function and promotes oncogene function during brain tumorigenesis.

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Pavankumar Videm

ORCID

, Dominic Rose, Fabrizio Costa, Rolf Backofen

ORCID

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles

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Tomasz Chelmicki, Friederike Dündar

ORCID

, Turley Mj, Matthew James Turley, Tasneem Khanam, Tugce Aktas

ORCID

, Fidel Ramírez, Patrick Rudolf Wright, Gendrel Av, Anne-Valerie Gendrel, Wright Pr, Pavankumar Videm

ORCID

, Rolf Backofen

ORCID

, Edith Heard, Thomas Manke and 1 other authors

MOF-associated complexes ensure stem cell identity and Xist repression

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Wright Pr, Patrick R. Wright, Jens Georg

ORCID

, Martin Mann, Sorescu Da, Dragos A. Sorescu, Richter As, Andreas S. Richter

ORCID

, Steffen Lott, Robert Kleinkauf, Wolfgang R. Hess, Hess Wr, Rolf Backofen

ORCID

CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

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Rolf Backofen

ORCID

, Tanja Vogel

Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins

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Kelly León, Thomas Boulo, Astrid Musnier, Julia Morales

ORCID

, Christophe Gauthier, Laurence Dupuy, Steffen Heyne, Rolf Backofen

ORCID

, Anne Poupon, Patrick Cormier, Eric Reiter, Pascale Crepieux

Activation of a GPCR leads to eIF4G phosphorylation at the 5' cap and to IRES-dependent translation.

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Kousik Kundu, Rolf Backofen

ORCID

Cluster based prediction of PDZ-peptide interactions

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Jutta Brendel, Britta Stoll, Sita J. Lange, Lange Sj, Kundan Sharma, Christof Lenz, Stachler Ae, Aris-Edda Stachler, Maier Lk, Lisa-Katharina Maier, Hagen Richter, Lisa Nickel, Schmitz Ra, Ruth A. Schmitz, Lennart Randau and 4 other authors

A Complex of Cas Proteins 5, 6, and 7 Is Required for the Biogenesis and Stability of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-derived RNAs (crRNAs) in Haloferax volcanii*

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Jing Qin, Peter F. Stadler

ORCID

, Markus Fricke, Manja Marz, Stadler Pf, Rolf Backofen

ORCID

Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

M. Mann, F. Nahar, N. Schnorr, R. Backofen

ORCID

, Stadler Pf, C. Flamm

Atom mapping with constraint programming.

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

R. Backofen

ORCID

, F. Amman, F. Costa, S. Findeiß, Richter As, Stadler Pf

Bioinformatics of prokaryotic RNAs.

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Daniel Maticzka, Lange Sj, Sita J. Lange, Fabrizio Costa, Rolf Backofen

ORCID

GraphProt: modeling binding preferences of RNA-binding proteins

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Saunders Sj, Omer S. Alkhnbashi, Alkhnbashi Os, Fabrizio Costa, Shah Sa, Shiraz Ali Shah

ORCID

, Roger Antony Garrett, Garrett Ra, Sita J. Saunders, Rolf Backofen

ORCID

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

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