Luis M. Rodríguez-R. - Dissemin

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All papers authored by Luis M. Rodríguez-R.

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2019 Kwanho Jeong, Alejandra Muñoz-Bodnar, Nathalia Arias Rojas, Lucie Poulin, Luis Miguel Rodriguez-R.

ORCID

, Lionel Gagnevin, Christian Vernière, Olivier Pruvost, Ralf Koebnik

ORCID

CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri

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Despina Tsementzi, Luis M. Rodriguez-R.

ORCID

, Carlos A. Ruiz-Perez, Alexandra Meziti, Janet K. Hatt, Konstantinos T. Konstantinidis

Ecogenomic characterization of widespread, closely-related SAR11 clades of the freshwater genus “Candidatus Fonsibacter” and proposal of Ca. Fonsibacter lacus sp. nov

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2018 Luis M. Rodriguez-R.

ORCID

, Santosh Gunturu, William T. Harvey, Ramon Rosselló-Mora, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis

ORCID

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

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Juan C. Castro, Luis M. Rodriguez-R.

ORCID

, R. Luis M. Rodriguez, William T. Harvey, Michael R. Weigand

ORCID

, Janet K. Hatt, Michell Q. Carter, Konstantinos T. Konstantinidis

imGLAD: Accurate detection and quantification of target organisms in metagenomes

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Luis M. Rodriguez-R.

ORCID

, Juan C. Castro, Nikos C. Kyrpides, James R. Cole, James M. Tiedje, Konstantinos T. Konstantinidis

How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?

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2017 Chirag Jain

ORCID

, Luis M. Rodriguez-R.

ORCID

, Adam M. Phillippy, Konstantinos T. Konstantinidis, Srinivas Aluru

High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries

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Angela Pena-Gonzalez, Chung K. Marston, Luis M. Rodriguez-R.

ORCID

, Cari B. Kolton, Julia Garcia-Diaz, Amanda Theppote, Michael Frace, Konstantinos T. Konstantinidis, Alex R. Hoffmaster

Draft Genome Sequence of Bacillus cereus LA2007, a Human-Pathogenic Isolate Harboring Anthrax-Like Plasmids

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2016 Despina Tsementzi, Jieying Wu, Samuel Deutsch, Sangeeta Nath, Rodriguez R. Lm, Luis M. Rodriguez-R.

ORCID

, Burns As, Andrew S. Burns, Piyush Ranjan, Neha Sarode, Rex R. Malmstrom, Malmstrom Rr, Padilla Cc, Cory C. Padilla, Stone Bk and 12 other authors

SAR11 bacteria linked to ocean anoxia and nitrogen loss

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Eric Robert Johnston, R. Luis M. Rodriguez, Luis M. Rodriguez-R.

ORCID

, Chengwei Luo, Mengting M. Yuan, Liyou Wu, Zhili He, Edward A. G. Schuur, Yiqi Luo, James M. Tiedje, Jizhong Zhou, Konstantinos T. Konstantinidis

Metagenomics reveals pervasive bacterial populations and reduced community diversity across the Alaska tundra ecosystem

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R. Luis M. Rodriguez, Luis M. Rodriguez-R.

ORCID

, Konstantinos T. Konstantinidis

The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes

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Maria J. Soto-Giron, Luis M. Rodriguez-R.

ORCID

, Chengwei Luo, Michael Elk, Hodon Ryu, Jill Hoelle, Jorge W. Santo Domingo, Konstantinos T. Konstantinidis

Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections

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2015 Luis M. Rodriguez-R.

ORCID

, Will A. Overholt, Christopher Hagan, Markus Huettel, Joel E. Kostka, Konstantinos T. Konstantinidis

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill

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2014 Lucie Poulin, Pierre Grygiel, Maxime Magne, Lionel Gagnevin

ORCID

, Luis M. Rodriguez R.

ORCID

, Natalia Forero Serna, Shuai Zhao, M. El Rafii, S. Dao, C. Tekete, Issa Wonni, O. Koita, O. Kolta, Olivier Pruvost, Valérie Verdier and 2 other authors

New Multilocus Variable-Number Tandem-Repeat Analysis Tool for Surveillance and Local Epidemiology of Bacterial Leaf Blight and Bacterial Leaf Streak of Rice Caused by Xanthomonas oryzae

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Despina Tsementzi, Rachel Poretsky, Rodriguez R. Lm, Luis M. Rodriguez-R.

ORCID

, Chengwei Luo, Konstantinos T. Konstantinidis, Konstantinidis Kt

Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities

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L. H. Orellana, L. M. Rodriguez-R.

ORCID

ORCID

, J. C. Chee-Sanford, R. A. Sanford, K. M. Ritalahti, F. E. Löffler, K. T. Konstantinidis

Detecting Nitrous Oxide Reductase (nosZ) Genes in Soil Metagenomes: Method Development and Implications for the Nitrogen Cycle

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R. Luis M. Rodriguez, Luis M. Rodriguez-R.

ORCID

, Konstantinos T. Konstantinidis

Estimating coverage in metagenomic data sets and why it matters

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Rachel Poretsky, R. Luis M. Rodriguez, Luis M. Rodriguez-R.

ORCID

, Chengwei Luo, Despina Tsementzi, Konstantinos T. Konstantinidis

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

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Chengwei Luo, Luis M. Rodriguez-R.

ORCID

, R. Luis M. Rodriguez, Konstantinos T. Konstantinidis

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

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2013 Chengwei Luo, R. Luis M. Rodriguez, Luis M. Rodriguez-R.

ORCID

, Eric R. Johnston, Liyou Wu, Lei Cheng, Kai Xue, Qichao Tu, Ye Deng, Zhili He, Jason Zhou Shi, Mengting Maggie Yuan, Rebecca A. Sherry, Dejun Li, Yiqi Luo and 5 other authors

Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics

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Thomas Dugé de Bernonville, Mario L. Arrieta-Ortiz, Luis M. Rodríguez-R.

ORCID

, R. Luis M. Rodríguez, Álvaro L. Pérez-Quintero, Ana C. Díaz, Nathalia Arias Rojas, Lucie Poulin, Mariana Restrepo Benavides, Tristan Boureau, Armelle Darrasse, Cesar Trujillo, Perrine David, Thomas Dugé de Bernonville, Paula Fontanilla and 36 other authors

Genomic Survey of Pathogenicity Determinants and VNTR Markers in the Cassava Bacterial Pathogen Xanthomonas axonopodis pv. Manihotis Strain CIO151

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