All papers authored by Deborah A. Hogan
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2023
Georgia Doing 
,
Alexandra J. Lee ,
Samuel L. Neff,
Taylor Reiter,
Jacob D. Holt,
Bruce A. Stanton,
Casey S. Greene ,
Deborah A. Hogan
,
Alexandra J. Lee ,
Samuel L. Neff,
Taylor Reiter,
Jacob D. Holt,
Bruce A. Stanton,
Casey S. Greene ,
Deborah A. Hogan
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia
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2022
Alexandra J. Lee ,
Dallas L. Mould ,
Jake Crawford ,
Dongbo Hu ,
Rani K. Powers ,
Georgia Doing ,
James C. Costello ,
Deborah A. Hogan ,
Casey S. Greene
,
Dallas L. Mould ,
Jake Crawford ,
Dongbo Hu ,
Rani K. Powers ,
Georgia Doing ,
James C. Costello ,
Deborah A. Hogan ,
Casey S. Greene
SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses
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Kimberley A. Lewis,
Danielle M. Vermilyea ,
Shanice S. Webster ,
Christopher J. Geiger,
Jaime de Anda,
Gerard C. L. Wong,
George A. O’Toole ,
Deborah A. Hogan
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,
Shanice S. Webster ,
Christopher J. Geiger,
Jaime de Anda,
Gerard C. L. Wong,
George A. O’Toole ,
Deborah A. Hogan
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2021
George A. O’Toole ,
Aurélie Crabbé,
Rolf Kümmerli ,
John J. LiPuma ,
Jennifer M. Bomberger ,
Jane C. Davies,
Dominique Limoli ,
Vanessa V. Phelan,
James B. Bliska ,
William H. DePas,
Lars E. Dietrich ,
Thomas H. Hampton ,
Ryan Hunter ,
Cezar M. Khursigara ,
Alexa Price-Whelan
and 23 other authors
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,
Aurélie Crabbé,
Rolf Kümmerli ,
John J. LiPuma ,
Jennifer M. Bomberger ,
Jane C. Davies,
Dominique Limoli ,
Vanessa V. Phelan,
James B. Bliska ,
William H. DePas,
Lars E. Dietrich ,
Thomas H. Hampton ,
Ryan Hunter ,
Cezar M. Khursigara ,
Alexa Price-Whelan
and 23 other authors
Download from doi.org
2020
Alexandra J. Lee ,
YoSon Park ,
Georgia Doing ,
Deborah A. Hogan ,
Casey S. Greene
,
YoSon Park ,
Georgia Doing ,
Deborah A. Hogan ,
Casey S. Greene
Correcting for experiment-specific variability in expression compendia can remove underlying signals
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Michelle E. Clay ,
John H. Hammond,
Fangfang Zhong,
Xiaolei Chen,
Caitlin H. Kowalski,
Alexandra J. Lee ,
Monique S. Porter,
Thomas H. Hampton,
Casey S. Greene ,
Ekaterina V. Pletneva ,
Deborah A. Hogan
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,
John H. Hammond,
Fangfang Zhong,
Xiaolei Chen,
Caitlin H. Kowalski,
Alexandra J. Lee ,
Monique S. Porter,
Thomas H. Hampton,
Casey S. Greene ,
Ekaterina V. Pletneva ,
Deborah A. Hogan
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2017
Jie Tan ,
Matthew Huyck ,
Dongbo Hu ,
René A. Zelaya ,
Deborah A. Hogan ,
Casey S. Greene
,
Matthew Huyck ,
Dongbo Hu ,
René A. Zelaya ,
Deborah A. Hogan ,
Casey S. Greene
ADAGE signature analysis: differential expression analysis with data-defined gene sets
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