All papers authored by Bernhard Palsson
Refreshing results…
2024
O. Ardalani 
,
P. V. Phaneuf ,
O. S. Mohite ,
L. K. Nielsen,
B. O. Palsson
,
P. V. Phaneuf ,
O. S. Mohite ,
L. K. Nielsen,
B. O. Palsson
Pangenome reconstruction of Lactobacillaceae metabolism predicts species-specific metabolic traits
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Nitasha D. Menon,
Saugat Poudel,
Anand V. Sastry,
Kevin Rychel,
Richard Szubin,
Nicholas Dillon ,
Hannah Tsunemoto,
Yujiro Hirose,
Bipin G. Nair,
Geetha B. Kumar ,
Bernhard O. Palsson ,
Victor Nizet
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,
Hannah Tsunemoto,
Yujiro Hirose,
Bipin G. Nair,
Geetha B. Kumar ,
Bernhard O. Palsson ,
Victor Nizet
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2023
Gi Bae Kim ,
Ji Yeon Kim,
Jong An Lee,
Charles J. Norsigian,
Bernhard O. Palsson ,
Sang Yup Lee
,
Ji Yeon Kim,
Jong An Lee,
Charles J. Norsigian,
Bernhard O. Palsson ,
Sang Yup Lee
Functional annotation of enzyme-encoding genes using deep learning with transformer layers
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2022
Charles J. Norsigian,
Heather A. Danhof ,
Colleen K. Brand,
Firas S. Midani ,
Jared T. Broddrick,
Tor C. Savidge,
Robert A. Britton,
Bernhard O. Palsson ,
Jennifer K. Spinler,
Jonathan M. Monk
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,
Colleen K. Brand,
Firas S. Midani ,
Jared T. Broddrick,
Tor C. Savidge,
Robert A. Britton,
Bernhard O. Palsson ,
Jennifer K. Spinler,
Jonathan M. Monk
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Akanksha Rajput ,
Hannah Tsunemoto,
Anand V. Sastry,
Richard Szubin,
Kevin Rychel ,
Joseph Sugie,
Joe Pogliano,
Bernhard O Palsson
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,
Hannah Tsunemoto,
Anand V. Sastry,
Richard Szubin,
Kevin Rychel ,
Joseph Sugie,
Joe Pogliano,
Bernhard O Palsson
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2021
Anand V. Sastry,
Nicholas Dillon ,
Amitesh Anand,
Saugat Poudel,
Ying Hefner,
Sibei Xu,
Richard Szubin,
Adam M. Feist,
Victor Nizet,
Bernhard Palsson
Download from journals.asm.org
,
Amitesh Anand,
Saugat Poudel,
Ying Hefner,
Sibei Xu,
Richard Szubin,
Adam M. Feist,
Victor Nizet,
Bernhard Palsson
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Akanksha Rajput ,
Yara Seif ,
Kumari Sonal Choudhary ,
Christopher Dalldorf,
Saugat Poudel ,
Jonathan M. Monk ,
Bernhard O. Palsson
,
Yara Seif ,
Kumari Sonal Choudhary ,
Christopher Dalldorf,
Saugat Poudel ,
Jonathan M. Monk ,
Bernhard O. Palsson
Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens
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Akanksha Rajput ,
Saugat Poudel,
Hannah Tsunemoto,
Michael Meehan,
Richard Szubin,
Connor A. Olson,
Yara Seif,
Anne Lamsa,
Nicholas Dillon ,
Alison Vrbanac,
Joseph Sugie,
Samira Dahesh,
Jonathan M. Monk,
Pieter C. Dorrestein,
Rob Knight
and 4 other authors
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,
Saugat Poudel,
Hannah Tsunemoto,
Michael Meehan,
Richard Szubin,
Connor A. Olson,
Yara Seif,
Anne Lamsa,
Nicholas Dillon ,
Alison Vrbanac,
Joseph Sugie,
Samira Dahesh,
Jonathan M. Monk,
Pieter C. Dorrestein,
Rob Knight
and 4 other authors
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2020
Gi Bae Kim ,
Ye Gao,
Bernhard O. Palsson ,
Sang Yup Lee
,
Ye Gao,
Bernhard O. Palsson ,
Sang Yup Lee
DeepTFactor: A deep learning-based tool for the prediction of transcription factors
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Charles J. Norsigian,
Heather A. Danhof ,
Colleen K. Brand,
Numan Oezguen ,
Firas S. Midani ,
Bernhard O. Palsson ,
Tor C. Savidge,
Robert A. Britton,
Jennifer K. Spinler ,
Jonathan M. Monk
Download from www.nature.com
,
Colleen K. Brand,
Numan Oezguen ,
Firas S. Midani ,
Bernhard O. Palsson ,
Tor C. Savidge,
Robert A. Britton,
Jennifer K. Spinler ,
Jonathan M. Monk
Download from www.nature.com
Wout van Helvoirt ,
Moritz E. Beber ,
Brett G. Olivier ,
Christian Lieven ,
Frank T. Bergmann,
Jennifer A. Bartell ,
Lars Mathias Blank,
Beber Me,
Birgitta E. Ebert,
Janaka N. Edirisinghe,
José P. Faria,
Meric Ataman,
Olivier Bg,
Adam M. Feist ,
Georgios Fengos
and 63 other authors
,
Moritz E. Beber ,
Brett G. Olivier ,
Christian Lieven ,
Frank T. Bergmann,
Jennifer A. Bartell ,
Lars Mathias Blank,
Beber Me,
Birgitta E. Ebert,
Janaka N. Edirisinghe,
José P. Faria,
Meric Ataman,
Olivier Bg,
Adam M. Feist ,
Georgios Fengos
and 63 other authors
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing
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Benjamín J. Sánchez,
Wout van Helvoirt ,
Moritz E. Beber ,
Christian Lieven ,
Brett G. Olivier ,
Frank T. Bergmann,
Jennifer A. Bartell ,
Beber Me,
Birgitta E. Ebert,
Janaka N. Edirisinghe,
José P. Faria,
Lars Mathias Blank,
Olivier Bg,
Meric Ataman,
Adam M. Feist
and 63 other authors
,
Moritz E. Beber ,
Christian Lieven ,
Brett G. Olivier ,
Frank T. Bergmann,
Jennifer A. Bartell ,
Beber Me,
Birgitta E. Ebert,
Janaka N. Edirisinghe,
José P. Faria,
Lars Mathias Blank,
Olivier Bg,
Meric Ataman,
Adam M. Feist
and 63 other authors
MEMOTE for standardized genome-scale metabolic model testing
Download from www.nature.com
Travis Nemkov ,
Davide Stefanoni ,
Aarash Bordbar,
Aaron Issaian ,
Bernhard O. Palsson ,
Larry J. Dumont ,
Ariel M. Hay ,
Anren Song,
Yang Xia,
Jasmina S. Redzic,
Elan Z. Eisenmesser,
James C. Zimring,
Steve Kleinman,
Kirk C. Hansen ,
Michael P. Busch
and 3 other authors
,
Davide Stefanoni ,
Aarash Bordbar,
Aaron Issaian ,
Bernhard O. Palsson ,
Larry J. Dumont ,
Ariel M. Hay ,
Anren Song,
Yang Xia,
Jasmina S. Redzic,
Elan Z. Eisenmesser,
James C. Zimring,
Steve Kleinman,
Kirk C. Hansen ,
Michael P. Busch
and 3 other authors
Blood Donor Exposome and Impact of Common Drugs on Red Blood Cell Metabolism
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2019
Akanksha Rajput ,
Saugat Poudel ,
Hannah Tsunemoto,
Michael Meehan,
Richard Szubin,
Connor A. Olson,
Anne Lamsa,
Yara Seif ,
Nicholas Dillon ,
Alison Vrbanac,
Joseph Sugie,
Samira Dahesh,
Jonathan M. Monk,
Pieter C. Dorrestein ,
Rob Knight
and 4 other authors
,
Saugat Poudel ,
Hannah Tsunemoto,
Michael Meehan,
Richard Szubin,
Connor A. Olson,
Anne Lamsa,
Yara Seif ,
Nicholas Dillon ,
Alison Vrbanac,
Joseph Sugie,
Samira Dahesh,
Jonathan M. Monk,
Pieter C. Dorrestein ,
Rob Knight
and 4 other authors
Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media
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Sarah R. Smith,
Chris L. Dupont,
James K. McCarthy ,
Jared T. Broddrick,
Miroslav Oborník,
Aleš Horák ,
Zoltán Füssy ,
Jaromír Cihlář,
Sabrina Kleessen,
Hong Zheng,
John P. McCrow,
Kim K. Hixson ,
Wagner L. Araújo ,
Adriano Nunes-Nesi,
Alisdair Fernie
and 3 other authors
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,
Jared T. Broddrick,
Miroslav Oborník,
Aleš Horák ,
Zoltán Füssy ,
Jaromír Cihlář,
Sabrina Kleessen,
Hong Zheng,
John P. McCrow,
Kim K. Hixson ,
Wagner L. Araújo ,
Adriano Nunes-Nesi,
Alisdair Fernie
and 3 other authors
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Gabriela I. Guzmán,
Troy E. Sandberg ,
Ryan A. LaCroix,
Ákos Nyerges,
Henrietta Papp,
Markus de Raad,
Zachary A. King,
Ying Hefner,
Trent R. Northen,
Richard A. Notebaart,
Csaba Pál,
Bernhard O. Palsson ,
Balázs Papp,
Adam M. Feist
,
Ryan A. LaCroix,
Ákos Nyerges,
Henrietta Papp,
Markus de Raad,
Zachary A. King,
Ying Hefner,
Trent R. Northen,
Richard A. Notebaart,
Csaba Pál,
Bernhard O. Palsson ,
Balázs Papp,
Adam M. Feist
Enzyme promiscuity shapes adaptation to novel growth substrates
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2018
David Heckmann,
Colton J. Lloyd,
Nathan Mih,
Yuanchi Ha,
Daniel C. Zielinski,
Zachary B. Haiman ,
Abdelmoneim Amer Desouki,
Martin J. Lercher ,
Bernhard O. Palsson
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,
Abdelmoneim Amer Desouki,
Martin J. Lercher ,
Bernhard O. Palsson
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