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All papers authored by Jia Meng

This paper is made freely available by the publisher.

This paper is made freely available by the publisher.

2018 Kunqi Chen

ORCID

, Zhen Wei

ORCID

, Hui Liu, João Pedro de Magalhães, Rong Rong

ORCID

, Zhiliang Lu, Jia Meng

ORCID

Enhancing Epitranscriptome Module Detection from m6A-Seq Data Using Threshold-Based Measurement Weighting Strategy

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Zhen Wei

ORCID

, Subbarayalu Panneerdoss, Santosh Timilsina, Jingting Zhu, Tabrez A. Mohammad, Zhi-Liang Lu, João Pedro de Magalhães, Yidong Chen, Rong Rong

ORCID

ORCID

, Manjeet K. Rao

ORCID

, Jia Meng

ORCID

Topological Characterization of Human and Mouse m5C Epitranscriptome Revealed by Bisulfite Sequencing

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2017 Brandon Tan, Hui Liu, Songyao Zhang, Suzane Ramos da Silva, Lin Zhang, Jia Meng

ORCID

, Xiaodong Cui, Hongfeng Yuan, Océane Sorel, Shao-Wu Zhang, Yufei Huang, Shou-Jiang Gao

ORCID

Viral and cellular N6-methyladenosine and N6,2′-O-dimethyladenosine epitranscriptomes in the KSHV life cycle

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2016 Xiaodong Cui, Jia Meng

ORCID

, Shaowu Zhang, Yidong Chen, Yufei Huang

A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data

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Lian Liu, Shao-Wu Zhang, Fan Gao, Yixin Zhang, Yufei Huang, Runsheng Chen, Jia Meng

ORCID

DRME: Count-based differential RNA methylation analysis at small sample size scenario

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Xiaodong Cui, Zhen Wei, Lin Zhang, Hui Liu, Lei Sun, Shao-Wu Zhang, Yufei Huang, Jia Meng

ORCID

Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features

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2015 Lei Sun, Hui Liu, Lin Zhang, Jia Meng

ORCID

lncRScan-SVM: A Tool for Predicting Long Non-Coding RNAs Using Support Vector Machine

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Lin Zhang

ORCID

, Hui Liu, Yufei Huang, Xuesong Wang, Yidong Chen, Jia Meng

ORCID

Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net

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Lian Liu, Shao-Wu Zhang, Yu-Chen Zhang, Hui Liu, Lin Zhang, Runsheng Chen, Yufei Huang, Jia Meng

ORCID

Decomposition of RNA methylome reveals co-methylation patterns induced by latent enzymatic regulators of the epitranscriptome

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Xiaodong Cui, Jia Meng

ORCID

, Manjeet K. Rao, Yidong Chen, Yufei Huang

HEPeak: an HMM-based exome peak-finding package for RNA epigenome sequencing data

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Yu-Chen Zhang, Shao-Wu Zhang, Lian Liu, Hui Liu, Lin Zhang, Xiaodong Cui, Yufei Huang, Jia Meng

ORCID

Spatially Enhanced Differential RNA Methylation Analysis from Affinity-Based Sequencing Data with Hidden Markov Model

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2014 Hui Liu, Mario A. Flores, Jia Meng

ORCID

, Lin Zhang, Xinyu Zhao, Manjeet K. Rao, Yidong Chen, Yufei Huang

MeT-DB: a database of transcriptome methylation in mammalian cells

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Adam W. Bero, Jia Meng

ORCID

, Sukhee Cho, Abra H. Shen, Rebecca Gail Canter, Maria Ericsson, Li-Huei Tsai

Early remodeling of the neocortex upon episodic memory encoding

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This paper is available in a repository.

Jia Meng

ORCID

, Zhiliang Lu, Hui Liu, Lin Zhang, Shaowu Zhang, Yidong Chen, Manjeet K. Rao, Yufei Huang

A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package

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Johannes Gräff, Nadine F. Joseph, Meryl E. Horn, Alireza Samiei, Jia Meng

ORCID

, Jinsoo Seo, Damien Rei, Adam W. Bero, Trongha X. Phan, Florence Wagner, Edward Holson, Jinbin Xu, Jianjun Sun, Rachael L. Neve, Robert H. Mach and 2 other authors

Epigenetic Priming of Memory Updating during Reconsolidation to Attenuate Remote Fear Memories

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2013 Jia Meng

ORCID

, Lenis Mauricio Meriño, Kay Robbins, Yufei Huang

Classification of Imperfectly Time-Locked Image RSVP Events with EEG Device

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Andrii Rudenko, Meelad M. Dawlaty, Jinsoo Seo, Albert W. Cheng, Jia Meng

ORCID

, Thuc Le, Kym F. Faull, Rudolf Jaenisch, Li-Huei Tsai

Tet1 Is Critical for Neuronal Activity-Regulated Gene Expression and Memory Extinction

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Jia Meng

ORCID

, Xiaodong Cui, Manjeet K. Rao, Yidong Chen, Yufei Huang

Exome-based analysis for RNA epigenome sequencing data

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2012 Lin Zhang, Jia Meng

ORCID

, Hui Liu, Yufei Huang

A nonparametric Bayesian approach for clustering bisulfate-based DNA methylation profiles

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