Eric Deutsch - Dissemin

Papers authored by Eric Deutsch

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2011 Christopher R. Kinsinger, James Apffel, Mark Baker, Xiaopeng Bian, Christoph H. Borchers, Ralph Bradshaw, Mi-Youn Brusniak, Daniel W. Chan, Eric W. Deutsch

, Bruno Domon, Jeff Gorman, Rudolf Grimm, William Hancock, Henning Hermjakob, David Horn and 21 other authors

Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)

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Sandra Orchard, Juan Pablo Albar, Eric W. Deutsch

, Martin Eisenacher, Juan A. Vizcaíno

, Henning Hermjakob

Enabling BioSharing - a report on the Annual Spring Workshop of the HUPO-PSI April 11-13, 2011, EMBL-Heidelberg, Germany

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Queenie Wt T. Chan, Robert Parker, Zhi Sun, Eric W. Deutsch

, Leonard J. Foster

A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues

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Terry Farrah, Eric W. Deutsch

, Gilbert S. Omenn, David S. Campbell, Zhi Sun, Julie A. Bletz, Parag Mallick, Jonathan E. Katz, Johan Malmström, Reto Ossola, Julian D. Watts, Biaoyang Lin, Hui Zhang, Robert L. Moritz, Ruedi Aebersold

A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas*

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Pierre Legrain, Ruedi Aebersold, Alexander Archakov, Amos Bairoch, Kumar Bala, Laura Beretta, John Bergeron, Christoph H. Borchers, Eric W. Deutsch

, Garry L. Corthals, Bruno Domon, Catherine E. Costello

, William Hancock, Fuchu He, Denis Hochstrasser and 11 other authors

The Human Proteome Project: Current State and Future Direction

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Mi-Youn K. Brusniak, Sung-Tat Kwok, Mark Christiansen, David Campbell, Lukas Reiter, Paola Picotti, Ulrike Kusebauch, Hector Ramos, Eric W. Deutsch

, Jingchun Chen, Robert L. Moritz, Ruedi Aebersold

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

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This paper is available in a repository.

Terry Farrah, Eric W. Deutsch

, Ruedi Aebersold

Using the Human Plasma PeptideAtlas to Study Human Plasma Proteins

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David Shteynberg, Eric W. Deutsch

, Henry Lam

, Jimmy K. Eng, Zhi Sun, Natalie Tasman, Luis Mendoza, Robert L. Moritz, Ruedi Aebersold, Alexey I. Nesvizhskii

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

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This paper was not found in any repository, but could be made available legally by the author.

Stephen A. Chervitz, Eric W. Deutsch

, Dawn Field, Helen Parkinson, John Quackenbush, Phillipe Rocca-Serra, Susanna-Assunta Sansone, Christian J. Stoeckert, Chris F. Taylor, Ronald Taylor, Catherine A. Ball

Data Standards for Omics Data: The Basis of Data Sharing and Reuse

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2010 Michael Turewicz, Eric W. Deutsch

Spectra, Chromatograms, Metadata: mzML-The Standard Data Format for Mass Spectrometer Output

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Eric W. Deutsch

Tandem Mass Spectrometry Spectral Libraries and Library Searching

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Lennart Martens

, Matthew Chambers, Marc Sturm

, Darren Kessner, Fredrik Levander, Jim Shofstahl, Wilfred H. Tang, Andreas Ropp, Andreas Rompp, Andreas Römpp, Steffen Neumann, Angel D. Pizarro, Luisa Montecchi-Palazzi, Natalie Tasman, Mike Coleman and 5 other authors

mzML—a Community Standard for Mass Spectrometry Data*

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Sandra Orchard, Juan-Pablo Albar, Eric W. Deutsch

, Martin Eisenacher, Pierre-Alain Binz

, Henning Hermjakob

Implementing Data Standards: A report on the HUPOPSI Workshop September 2009, Toronto, Canada

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Jeremy Handcock, Eric W. Deutsch

, John Boyle

mspecLINE: bridging knowledge of human disease with the proteome

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Eric W. Deutsch

, Luis Mendoza, David Shteynberg, Terry Farrah, Henry Lam

, Natalie Tasman, Zhi Sun, Erik Nilsson, Brian Pratt, Bryan Prazen, Jimmy K. Eng, Daniel B. Martin, Alexey I. Nesvizhskii, Ruedi Aebersold

A Guided Tour of the Trans-Proteomic Pipeline

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Henry Lam

, Eric W. Deutsch

, Ruedi Aebersold

Artificial Decoy Spectral Libraries for False Discovery Rate Estimation in Spectral Library Searching in Proteomics

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Eric W. Deutsch

, David Shteynberg, Henry Lam

, Zhi Sun, Jimmy K. Eng, Christine Carapito

, Priska D. von Haller, Natalie Tasman, Luis Mendoza, Terry Farrah, Ruedi Aebersold

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets

Download from www.ncbi.nlm.nih.gov

2009 Eric W. Deutsch

Mass Spectrometer Output File Format mzML

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Eric W. Deutsch

The PeptideAtlas Project

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Martin Beck

, Johan A. Malmström, Vinzenz Lange, Alexander Schmidt, Eric W. Deutsch

, Ruedi Aebersold

Visual proteomics of the human pathogen Leptospira interrogans

Download from www.ncbi.nlm.nih.gov

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Papers authored by Eric Deutsch